RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 GRID2IPA4D2P6 1211 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 LRRIQ4A6NIV6 560 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 SFI1A8K8P3 1242 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 CLIC2O15247 247 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 CLDN3O15551 220 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 ZEB2O60315 1214 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 COBLO75128 1261 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 NOL4O94818 638 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 STBD1O95210 358 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 IL18RAPO95256 599 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 CELF2O95319 508 aaKnown RBP8.14□□□□□ -1.11
VPS39-204ENST00000561818 H2AFZP0C0S5 128 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 MYBL1P10243 752 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 GNAT1P11488 350 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 GZMAP12544 262 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 ADORA2AP29274 412 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 EIF4A3P38919 411 aaKnown RBP8.14□□□□□ -1.11
VPS39-204ENST00000561818 PDE6CP51160 858 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 CHMP4BP1P59074 171 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 CYP24A1Q07973 514 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 GPS2Q13227 327 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 KIF22Q14807 665 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 DGKDQ16760 1214 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 FAM187BQ17R55 369 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 OLFML2BQ68BL8 750 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 PLA2G4FQ68DD2 849 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 H2AFVQ71UI9 128 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 ZNF410Q86VK4 478 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 CD302Q8IX05 232 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 PARD3BQ8TEW8 1205 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 CTNNBL1Q8WYA6 563 aaPredicted RBP8.14□□□□□ -1.11
VPS39-204ENST00000561818 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.14□□□□□ -1.11
VPS39-204ENST00000561818 MS4A4AQ96JQ5 239 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 CHP1Q99653 195 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 DESI2Q9BSY9 194 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 SELENOOQ9BVL4 669 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 FGFBP2Q9BYJ0 223 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 NLRC4Q9NPP4 1024 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 AGO2Q9UKV8 859 aaKnown RBP8.14□□□□□ -1.11
VPS39-204ENST00000561818 GUCA1BQ9UMX6 200 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 TRPC6Q9Y210 931 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 HYOU1Q9Y4L1 999 aa8.14□□□□□ -1.11
VPS39-204ENST00000561818 GSTTP1A0A1W2PQM5 241 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 TARSL2A2RTX5 802 aaKnown RBP8.13□□□□□ -1.11
VPS39-204ENST00000561818 RASSF10A6NK89 507 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 BTBD19C9JJ37 291 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 CLSTN1O94985 981 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 HOXD8P13378 290 aaPredicted RBP8.13□□□□□ -1.11
VPS39-204ENST00000561818 P4HA1P13674 534 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 ARHGAP25P42331 645 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 MNX1P50219 401 aaPredicted RBP8.13□□□□□ -1.11
VPS39-204ENST00000561818 CPT1AP50416 773 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 HADHBP55084 474 aaKnown RBP8.13□□□□□ -1.11
VPS39-204ENST00000561818 BRD3Q15059 726 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 TCEAL1Q15170 157 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 KIAA0753Q2KHM9 967 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 DUSP28Q4G0W2 176 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 EPC2Q52LR7 807 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 GLE1Q53GS7 698 aaKnown RBP8.13□□□□□ -1.11
VPS39-204ENST00000561818 CCDC181Q5TID7 509 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 HGSNATQ68CP4 663 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 ALKBH5Q6P6C2 394 aaKnown RBP8.13□□□□□ -1.11
VPS39-204ENST00000561818 ZNF572Q7Z3I7 529 aaPredicted RBP8.13□□□□□ -1.11
VPS39-204ENST00000561818 WDR49Q8IV35 697 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 ACRBPQ8NEB7 543 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 ANKRD7Q92527 254 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 EEF2KMTQ96G04 330 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 ADPGKQ9BRR6 497 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.13□□□□□ -1.11
VPS39-204ENST00000561818 PDCL3Q9H2J4 239 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 ZNF408Q9H9D4 720 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 ZFYVE28Q9HCC9 887 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 XPNPEP1Q9NQW7 623 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 RAB20Q9NX57 234 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 DNAJC12Q9UKB3 198 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 PCDHGC5Q9Y5F6 944 aa8.13□□□□□ -1.11
VPS39-204ENST00000561818 A0A0B4J269 797 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 CCDC151A5D8V7 595 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 ANKRD62A6NC57 917 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 MIF4GDA9UHW6 222 aaKnown RBP8.12□□□□□ -1.11
VPS39-204ENST00000561818 ACKR2O00590 384 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 OGTO15294 1046 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 EVI5O60447 810 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 TADA3O75528 432 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 TMEM253P0C7T8 217 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 HSPA6P17066 643 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 TNFAIP3P21580 790 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 GLRA2P23416 452 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 AXLP30530 894 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 RGS2P41220 211 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 MATR3P43243 847 aaKnown RBP eCLIP8.12□□□□□ -1.11
VPS39-204ENST00000561818 CASP4P49662 377 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 NAP1L1P55209 391 aaKnown RBP8.12□□□□□ -1.11
VPS39-204ENST00000561818 SP4Q02446 784 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 MCL1Q07820 350 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 KCNA1Q09470 495 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 MTF1Q14872 753 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 DRAP1Q14919 205 aaPredicted RBP8.12□□□□□ -1.11
VPS39-204ENST00000561818 DCAF4L1Q3SXM0 396 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 CFAP221Q4G0U5 840 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms