RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 NLRP7Q8WX94 980 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 BSNDQ8WZ55 320 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 MRFAP1L1Q96HT8 127 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 NLRP4Q96MN2 994 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 DUSP9Q99956 384 aaKnown RBP7.04□□□□□ -1.28
SPG11-221ENST00000560299 NFKBIZQ9BYH8 718 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 PRO3102Q9H379 93 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 KIAA1586Q9HCI6 787 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 STARD7Q9NQZ5 370 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 SAMSN1Q9NSI8 373 aaKnown RBP7.04□□□□□ -1.28
SPG11-221ENST00000560299 HDAC6Q9UBN7 1215 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 LIMA1Q9UHB6 759 aaKnown RBP7.04□□□□□ -1.28
SPG11-221ENST00000560299 NOD1Q9Y239 953 aa7.04□□□□□ -1.28
SPG11-221ENST00000560299 MYADML2A6NDP7 307 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 INO80B-WBP1J3KQ70 363 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 N4BP3O15049 544 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 CLIC2O15247 247 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 SLC16A3O15427 465 aaKnown RBP7.03□□□□□ -1.28
SPG11-221ENST00000560299 EVI5O60447 810 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 EXOC3O60645 756 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 ERLIN2O94905 339 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 LDHAP00338 332 aaKnown RBP7.03□□□□□ -1.28
SPG11-221ENST00000560299 PRKCBP05771 671 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 KRT13P13646 458 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 GARTP22102 1010 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 CDC25BP30305 580 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 PSMC2P35998 433 aaKnown RBP7.03□□□□□ -1.28
SPG11-221ENST00000560299 MATR3P43243 847 aaKnown RBP eCLIP7.03□□□□□ -1.28
SPG11-221ENST00000560299 ZNF75DP51815 510 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 NLRP11P59045 1033 aaKnown RBP7.03□□□□□ -1.28
SPG11-221ENST00000560299 PTENP60484 403 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 ADAM17P78536 824 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 ITGA7Q13683 1181 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 HSP90AA4PQ58FG1 418 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 MARCH8Q5T0T0 291 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 FKBP15Q5T1M5 1219 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 CEP135Q66GS9 1140 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 CDCA2Q69YH5 1023 aaPredicted RBP7.03□□□□□ -1.28
SPG11-221ENST00000560299 ZPBP2Q6X784 338 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 FRMD5Q7Z6J6 570 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 IFNLR1Q8IU57 520 aaPredicted RBP7.03□□□□□ -1.28
SPG11-221ENST00000560299 FAM126BQ8IXS8 530 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 KIAA0319LQ8IZA0 1049 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 LINC01465Q8N7H1 131 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 XXYLT1Q8NBI6 393 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 TMEM174Q8WUU8 243 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 POMGNT1Q8WZA1 660 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 CNOT6LQ96LI5 555 aaKnown RBP7.03□□□□□ -1.28
SPG11-221ENST00000560299 PRIMPOLQ96LW4 560 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 MED15Q96RN5 788 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 TUBGCP2Q9BSJ2 902 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 TCHPQ9BT92 498 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 MKNK1Q9BUB5 465 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 KIFC3Q9BVG8 833 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 NOC4LQ9BVI4 516 aaKnown RBP7.03□□□□□ -1.28
SPG11-221ENST00000560299 MRPL4Q9BYD3 311 aaKnown RBP7.03□□□□□ -1.28
SPG11-221ENST00000560299 FGFBP2Q9BYJ0 223 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 GCOM2Q9BZD3 368 aaPredicted RBP7.03□□□□□ -1.28
SPG11-221ENST00000560299 FAM49AQ9H0Q0 323 aaPredicted RBP7.03□□□□□ -1.28
SPG11-221ENST00000560299 AGPAT3Q9NRZ7 376 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 PRMT7Q9NVM4 692 aaPredicted RBP7.03□□□□□ -1.28
SPG11-221ENST00000560299 IFNKQ9P0W0 207 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 ARMCX3Q9UH62 379 aaPredicted RBP7.03□□□□□ -1.28
SPG11-221ENST00000560299 GTF2IRD1Q9UHL9 959 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 TBX21Q9UL17 535 aa7.03□□□□□ -1.28
SPG11-221ENST00000560299 A0A087WZ62 844 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 DCDC2CA8MYV0 355 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 ACKR2O00590 384 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 MAPK13O15264 365 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 CLDN3O15551 220 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 TREHO43280 583 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 TGFB1I1O43294 461 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 STX10O60499 249 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 PIGRP01833 764 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 VTNP04004 478 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 PTMAP06454 111 aaKnown RBP7.02□□□□□ -1.29
SPG11-221ENST00000560299 PFKMP08237 780 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 TPM1P09493 284 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 ATP1A3P13637 1013 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 RFC2P35250 354 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 HOXD13P35453 343 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 DEKP35659 375 aaKnown RBP7.02□□□□□ -1.29
SPG11-221ENST00000560299 CYP2J2P51589 502 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 GPC3P51654 580 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 COPB1P53618 953 aaKnown RBP7.02□□□□□ -1.29
SPG11-221ENST00000560299 MARSP56192 900 aaKnown RBP7.02□□□□□ -1.29
SPG11-221ENST00000560299 KCNA1Q09470 495 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 CETN1Q12798 172 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 DRP2Q13474 957 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 PRPF4BQ13523 1007 aaKnown RBP7.02□□□□□ -1.29
SPG11-221ENST00000560299 KRT31Q15323 416 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 PTGISQ16647 500 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 MAN2A1Q16706 1144 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 KYAT1Q16773 422 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 FAM187BQ17R55 369 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 GPR153Q6NV75 609 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 LRRC55Q6ZSA7 311 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 KSR1Q8IVT5 923 aa7.02□□□□□ -1.29
SPG11-221ENST00000560299 ZC3H3Q8IXZ2 948 aaKnown RBP7.02□□□□□ -1.29
SPG11-221ENST00000560299 FAM186BQ8IYM0 893 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms