RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 VN1R3Q9BXE9 311 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 MINDY3Q9H8M7 445 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 KCNK12Q9HB15 430 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 RGL1Q9NZL6 768 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 FBXL21Q9UKT6 434 aa10.22□□□□□ -0.77
HDDC3-204ENST00000559834 PTPRZ1P23471 2315 aaPredicted RBP10.22□□□□□ -0.77
HDDC3-204ENST00000559834 CCDC195A0A1B0GUA6 201 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 INO80B-WBP1J3KQ70 363 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 C2CD2LO14523 706 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 INPPL1O15357 1258 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 DGAT1O75907 488 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 GLUD1P00367 558 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 NBL1P41271 181 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 GLUD2P49448 558 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 AFF1P51825 1210 aaKnown RBP10.21□□□□□ -0.77
HDDC3-204ENST00000559834 PTENP60484 403 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 SCRN1Q12765 414 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 CTTNQ14247 550 aaKnown RBP10.21□□□□□ -0.77
HDDC3-204ENST00000559834 SMG8Q8ND04 991 aaKnown RBP10.21□□□□□ -0.77
HDDC3-204ENST00000559834 FLCNQ8NFG4 579 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 HDAC7Q8WUI4 952 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 NXPE3Q969Y0 559 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 DYDC2Q96IM9 177 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 GAD1Q99259 594 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 HERC2P3Q9BVR0 1158 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 RHOBTB2Q9BYZ6 727 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 TRIM6Q9C030 488 aaPredicted RBP10.21□□□□□ -0.77
HDDC3-204ENST00000559834 CSRNP2Q9H175 543 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 SMOC2Q9H3U7 446 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 BRMS1Q9HCU9 246 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 BMP2KQ9NSY1 1161 aaPredicted RBP10.21□□□□□ -0.77
HDDC3-204ENST00000559834 ANKEF1Q9NU02 776 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 WRAP73Q9P2S5 460 aaPredicted RBP10.21□□□□□ -0.77
HDDC3-204ENST00000559834 PCDHA12Q9UN75 941 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 GIT1Q9Y2X7 761 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 PRG3Q9Y2Y8 225 aaPredicted RBP10.21□□□□□ -0.77
HDDC3-204ENST00000559834 IPPQ9Y573 584 aa10.21□□□□□ -0.77
HDDC3-204ENST00000559834 CACNA1HO95180 2353 aa10.21□□□□□ -0.78
HDDC3-204ENST00000559834 ARL5CA6NH57 179 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 STK25O00506 426 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 TEX28O15482 410 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 B4GALT3O60512 393 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 TSPAN1O60635 241 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 SLITRK3O94933 977 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 LYPLA2O95372 231 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 XRCC6P12956 609 aaKnown RBP eCLIP10.2□□□□□ -0.78
HDDC3-204ENST00000559834 GBP2P32456 591 aaPredicted RBP10.2□□□□□ -0.78
HDDC3-204ENST00000559834 FOXK2Q01167 660 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 CYP4A11Q02928 519 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 ANKRD1Q15327 319 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 KIAA0319Q5VV43 1072 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 IFNLR1Q8IU57 520 aaPredicted RBP10.2□□□□□ -0.78
HDDC3-204ENST00000559834 GPR65Q8IYL9 337 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 NKD2Q969F2 451 aaPredicted RBP10.2□□□□□ -0.78
HDDC3-204ENST00000559834 CCDC43Q96MW1 224 aaKnown RBP10.2□□□□□ -0.78
HDDC3-204ENST00000559834 EIF2AK1Q9BQI3 630 aaKnown RBP10.2□□□□□ -0.78
HDDC3-204ENST00000559834 PLEKHA4Q9H4M7 779 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 C5orf42Q9H799 3197 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 PIDD1Q9HB75 910 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 RXFP1Q9HBX9 757 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 WDR6Q9NNW5 1121 aaKnown RBP10.2□□□□□ -0.78
HDDC3-204ENST00000559834 MAN1C1Q9NR34 630 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 STK36Q9NRP7 1315 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.2□□□□□ -0.78
HDDC3-204ENST00000559834 ORC3Q9UBD5 711 aaPredicted RBP10.2□□□□□ -0.78
HDDC3-204ENST00000559834 WNT16Q9UBV4 365 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 DUSP12Q9UNI6 340 aa10.2□□□□□ -0.78
HDDC3-204ENST00000559834 KMT2EQ8IZD2 1858 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 ZBTB39O15060 712 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 PFKFB2O60825 505 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 AOC1P19801 751 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 RFX1P22670 979 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 KRT2P35908 639 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 MLH1P40692 756 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 DSG1Q02413 1049 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 CREMQ03060 361 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 DSC1Q08554 894 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 SPIRE1Q08AE8 756 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 USP41Q3LFD5 358 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 TAS1R1Q7RTX1 841 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 POTEDQ86YR6 584 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 SIX5Q8N196 739 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 OXER1Q8TDS5 423 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 SMG7Q92540 1137 aaKnown RBP10.19□□□□□ -0.78
HDDC3-204ENST00000559834 CPB2Q96IY4 423 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 SNX27Q96L92 541 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 HSD17B14Q9BPX1 270 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 EIF2AQ9BY44 585 aaKnown RBP10.19□□□□□ -0.78
HDDC3-204ENST00000559834 NFKBIZQ9BYH8 718 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 RNF39Q9H2S5 420 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 CHST7Q9NS84 486 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 MARCH5Q9NX47 278 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.19□□□□□ -0.78
HDDC3-204ENST00000559834 HES2Q9Y543 173 aa10.19□□□□□ -0.78
HDDC3-204ENST00000559834 A0A1B0GUA9 196 aa10.18□□□□□ -0.78
HDDC3-204ENST00000559834 TADA2AO75478 443 aa10.18□□□□□ -0.78
HDDC3-204ENST00000559834 EFEMP2O95967 443 aa10.18□□□□□ -0.78
HDDC3-204ENST00000559834 NPR3P17342 541 aa10.18□□□□□ -0.78
HDDC3-204ENST00000559834 ARF4P18085 180 aaPredicted RBP10.18□□□□□ -0.78
HDDC3-204ENST00000559834 ARL2P36404 184 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms