RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 KYAT1Q16773 422 aa9.54□□□□□ -0.88
USP3-208ENST00000558285 HYIQ5T013 277 aa9.54□□□□□ -0.88
USP3-208ENST00000558285 CDCA2Q69YH5 1023 aaPredicted RBP9.54□□□□□ -0.88
USP3-208ENST00000558285 KCNT2Q6UVM3 1135 aa9.54□□□□□ -0.88
USP3-208ENST00000558285 CCDC73Q6ZRK6 1079 aa9.54□□□□□ -0.88
USP3-208ENST00000558285 MRPL10Q7Z7H8 261 aaKnown RBP9.54□□□□□ -0.88
USP3-208ENST00000558285 CRIPAKQ8N1N5 446 aa9.54□□□□□ -0.88
USP3-208ENST00000558285 KRI1Q8N9T8 703 aaKnown RBP9.54□□□□□ -0.88
USP3-208ENST00000558285 KLHL23Q8NBE8 558 aa9.54□□□□□ -0.88
USP3-208ENST00000558285 COLGALT1Q8NBJ5 622 aa9.54□□□□□ -0.88
USP3-208ENST00000558285 HELQQ8TDG4 1101 aa9.54□□□□□ -0.88
USP3-208ENST00000558285 TRIM44Q96DX7 344 aaPredicted RBP9.54□□□□□ -0.88
USP3-208ENST00000558285 TMEM175Q9BSA9 504 aa9.54□□□□□ -0.88
USP3-208ENST00000558285 KMT5AQ9NQR1 393 aa9.54□□□□□ -0.88
USP3-208ENST00000558285 ENTPD7Q9NQZ7 604 aa9.54□□□□□ -0.88
USP3-208ENST00000558285 TOPORSQ9NS56 1045 aaPredicted RBP9.54□□□□□ -0.88
USP3-208ENST00000558285 TYW1Q9NV66 732 aaKnown RBP9.54□□□□□ -0.88
USP3-208ENST00000558285 STK17AQ9UEE5 414 aa9.54□□□□□ -0.88
USP3-208ENST00000558285 ODF2LQ9ULJ1 636 aa9.54□□□□□ -0.88
USP3-208ENST00000558285 INPP5FQ9Y2H2 1132 aa9.54□□□□□ -0.88
USP3-208ENST00000558285 MORC2Q9Y6X9 1032 aaPredicted RBP9.54□□□□□ -0.88
USP3-208ENST00000558285 RANBP2P49792 3224 aaKnown RBP9.54□□□□□ -0.88
USP3-208ENST00000558285 EVPLQ92817 2033 aa9.54□□□□□ -0.88
USP3-208ENST00000558285 ZBTB39O15060 712 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 FAM13AO94988 1023 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 ALDH2P05091 517 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 PRKCBP05771 671 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 FGFR4P22455 802 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 EP400NLQ6ZTU2 488 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 ZNF598Q86UK7 904 aaKnown RBP9.53□□□□□ -0.88
USP3-208ENST00000558285 SYT2Q8N9I0 419 aaPredicted RBP9.53□□□□□ -0.88
USP3-208ENST00000558285 ASAP3Q8TDY4 903 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 MRPS27Q92552 414 aaKnown RBP9.53□□□□□ -0.88
USP3-208ENST00000558285 PABPC5Q96DU9 382 aaKnown RBP9.53□□□□□ -0.88
USP3-208ENST00000558285 CCDC34Q96HJ3 373 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 CASD1Q96PB1 797 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 ASB2Q96Q27 587 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 COLEC11Q9BWP8 271 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 MRPL4Q9BYD3 311 aaKnown RBP9.53□□□□□ -0.88
USP3-208ENST00000558285 TMEM134Q9H6X4 195 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 DNAH12Q6ZR08 3092 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 RALGAPA2Q2PPJ7 1873 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 GBF1Q92538 1859 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 A0A1B0GUA9 196 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 ZC3H11AO75152 810 aaKnown RBP eCLIP9.53□□□□□ -0.88
USP3-208ENST00000558285 CSDE1O75534 798 aaKnown RBP9.53□□□□□ -0.88
USP3-208ENST00000558285 PLA2G4BP0C869 781 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 LIG1P18858 919 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 AMPD3Q01432 767 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 CREMQ03060 361 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 SMC1AQ14683 1233 aaKnown RBP9.53□□□□□ -0.88
USP3-208ENST00000558285 STXBP4Q6ZWJ1 553 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 PPFIBP1Q86W92 1011 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 KCNG4Q8TDN1 519 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 POF1BQ8WVV4 589 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 SPIRE2Q8WWL2 714 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 TCHPQ9BT92 498 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 CCDC94Q9BW85 323 aaPredicted RBP9.53□□□□□ -0.88
USP3-208ENST00000558285 CCSER1Q9C0I3 900 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 FZD8Q9H461 694 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 TLE6Q9H808 572 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 SRPRBQ9Y5M8 271 aaKnown RBP9.53□□□□□ -0.88
USP3-208ENST00000558285 SIP14410 1827 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 LOXHD1Q8IVV2 1947 aa9.53□□□□□ -0.88
USP3-208ENST00000558285 EPOPA6NHQ4 379 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 E9PMD0 336 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 HIP1RO75146 1068 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 ITGB1P05556 798 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 PLS3P13797 630 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 ARF4P18085 180 aaPredicted RBP9.52□□□□□ -0.89
USP3-208ENST00000558285 CA8P35219 290 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 PEX3P56589 373 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 GRIK3Q13003 919 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 RRAGBQ5VZM2 374 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 RINT1Q6NUQ1 792 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 TMC7Q7Z402 723 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 BICD1Q96G01 975 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 POP1Q99575 1024 aaKnown RBP9.52□□□□□ -0.89
USP3-208ENST00000558285 EMILIN2Q9BXX0 1053 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 CUEDC2Q9H467 287 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 UBE2ZQ9H832 354 aaPredicted RBP9.52□□□□□ -0.89
USP3-208ENST00000558285 ALG13Q9NP73 1137 aaKnown RBP9.52□□□□□ -0.89
USP3-208ENST00000558285 GPRC5CQ9NQ84 441 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 SLC38A7Q9NVC3 462 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 PARP2Q9UGN5 583 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 MTMR6Q9Y217 621 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 FAN1Q9Y2M0 1017 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 IPPQ9Y573 584 aa9.52□□□□□ -0.89
USP3-208ENST00000558285 DLL1O00548 723 aa9.51□□□□□ -0.89
USP3-208ENST00000558285 GRM6O15303 877 aa9.51□□□□□ -0.89
USP3-208ENST00000558285 PPP6R2O75170 966 aa9.51□□□□□ -0.89
USP3-208ENST00000558285 OFD1O75665 1012 aa9.51□□□□□ -0.89
USP3-208ENST00000558285 ARHGEF15O94989 841 aa9.51□□□□□ -0.89
USP3-208ENST00000558285 NPTXRO95502 500 aa9.51□□□□□ -0.89
USP3-208ENST00000558285 YEATS4O95619 227 aa9.51□□□□□ -0.89
USP3-208ENST00000558285 ZSCAN22P10073 491 aaPredicted RBP9.51□□□□□ -0.89
USP3-208ENST00000558285 MATR3P43243 847 aaKnown RBP eCLIP9.51□□□□□ -0.89
USP3-208ENST00000558285 NDUFV1P49821 464 aa9.51□□□□□ -0.89
USP3-208ENST00000558285 BCAR1P56945 870 aa9.51□□□□□ -0.89
USP3-208ENST00000558285 ELAVL2Q12926 359 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms