RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 XRCC6P12956 609 aaKnown RBP eCLIP16.24■□□□□ 0.19
SHMT2-235ENST00000557740 EPCAMP16422 314 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 GLRA2P23416 452 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 ARL2P36404 184 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 MLH1P40692 756 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 MTHFRP42898 656 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 AFF1P51825 1210 aaKnown RBP16.24■□□□□ 0.19
SHMT2-235ENST00000557740 HMGN5P82970 282 aaKnown RBP16.24■□□□□ 0.19
SHMT2-235ENST00000557740 ORC2Q13416 577 aaPredicted RBP16.24■□□□□ 0.19
SHMT2-235ENST00000557740 CABP7Q86V35 215 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 PPFIBP1Q86W92 1011 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 MCPH1Q8NEM0 835 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 ERMNQ8TAM6 284 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 GAD1Q99259 594 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 VN1R3Q9BXE9 311 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 EMILIN2Q9BXX0 1053 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 NFKBIZQ9BYH8 718 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 KCNH6Q9H252 994 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 FOXP1Q9H334 677 aaPredicted RBP16.24■□□□□ 0.19
SHMT2-235ENST00000557740 POMKQ9H5K3 350 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 PRG3Q9Y2Y8 225 aaPredicted RBP16.24■□□□□ 0.19
SHMT2-235ENST00000557740 TECTAO75443 2155 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 A0A087WWV3 80 aa16.23■□□□□ 0.19
SHMT2-235ENST00000557740 NRP1O14786 923 aa16.23■□□□□ 0.19
SHMT2-235ENST00000557740 B4GALT5O43286 388 aa16.23■□□□□ 0.19
SHMT2-235ENST00000557740 NR1I2O75469 434 aa16.23■□□□□ 0.19
SHMT2-235ENST00000557740 URODP06132 367 aa16.23■□□□□ 0.19
SHMT2-235ENST00000557740 SPATA31C1P0DKV0 1188 aa16.23■□□□□ 0.19
SHMT2-235ENST00000557740 ARF4P18085 180 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-235ENST00000557740 OR1G1P47890 313 aa16.23■□□□□ 0.19
SHMT2-235ENST00000557740 ZNF174Q15697 407 aa16.23■□□□□ 0.19
SHMT2-235ENST00000557740 AMHR2Q16671 573 aa16.23■□□□□ 0.19
SHMT2-235ENST00000557740 PTPN21Q16825 1174 aa16.23■□□□□ 0.19
SHMT2-235ENST00000557740 MAEAQ7L5Y9 396 aa16.23■□□□□ 0.19
SHMT2-235ENST00000557740 CATSPER3Q86XQ3 398 aa16.23■□□□□ 0.19
SHMT2-235ENST00000557740 FAM184AQ8NB25 1140 aa16.23■□□□□ 0.19
SHMT2-235ENST00000557740 PBXIP1Q96AQ6 731 aa16.23■□□□□ 0.19
SHMT2-235ENST00000557740 ZSCAN31Q96LW9 406 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-235ENST00000557740 NACC1Q96RE7 527 aa16.23■□□□□ 0.19
SHMT2-235ENST00000557740 NXF3Q9H4D5 531 aaKnown RBP16.23■□□□□ 0.19
SHMT2-235ENST00000557740 GPRC5CQ9NQ84 441 aa16.23■□□□□ 0.19
SHMT2-235ENST00000557740 SH2B1Q9NRF2 756 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-235ENST00000557740 MRPL17Q9NRX2 175 aaKnown RBP16.23■□□□□ 0.19
SHMT2-235ENST00000557740 HES2Q9Y543 173 aa16.23■□□□□ 0.19
SHMT2-235ENST00000557740 INPPL1O15357 1258 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 MED24O75448 989 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 NPTXRO95502 500 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 CENPBP07199 599 aaPredicted RBP16.22■□□□□ 0.19
SHMT2-235ENST00000557740 WEE2P0C1S8 567 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 KLRC2P26717 231 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 RBM25P49756 843 aaKnown RBP16.22■□□□□ 0.19
SHMT2-235ENST00000557740 SCNN1GP51170 649 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 SIGLEC14Q08ET2 396 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 TTC38Q5R3I4 469 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 HAUS3Q68CZ6 603 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 KIAA1841Q6NSI8 718 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 SLC27A1Q6PCB7 646 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 POTEGQ6S5H5 508 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 ZBTB8OSQ8IWT0 167 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 SUGP1Q8IWZ8 645 aaKnown RBP16.22■□□□□ 0.19
SHMT2-235ENST00000557740 COLGALT2Q8IYK4 626 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 C12orf76Q8N812 135 aaPredicted RBP16.22■□□□□ 0.19
SHMT2-235ENST00000557740 SLC22A17Q8WUG5 538 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 ZFP42Q96MM3 310 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 POLR3CQ9BUI4 534 aaPredicted RBP16.22■□□□□ 0.19
SHMT2-235ENST00000557740 HERC2P3Q9BVR0 1158 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 RNF39Q9H2S5 420 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 SFXN1Q9H9B4 322 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 DBR1Q9UK59 544 aaKnown RBP16.22■□□□□ 0.19
SHMT2-235ENST00000557740 NOL7Q9UMY1 257 aaKnown RBP16.22■□□□□ 0.19
SHMT2-235ENST00000557740 GIT1Q9Y2X7 761 aa16.22■□□□□ 0.19
SHMT2-235ENST00000557740 ARHGEF35A5YM69 484 aa16.21■□□□□ 0.19
SHMT2-235ENST00000557740 C2CD4DB7Z1M9 353 aa16.21■□□□□ 0.19
SHMT2-235ENST00000557740 C2CD2LO14523 706 aa16.21■□□□□ 0.19
SHMT2-235ENST00000557740 SOD2P04179 222 aa16.21■□□□□ 0.19
SHMT2-235ENST00000557740 HOXD11P31277 338 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-235ENST00000557740 TMEM132AQ24JP5 1023 aa16.21■□□□□ 0.19
SHMT2-235ENST00000557740 ATAT1Q5SQI0 421 aa16.21■□□□□ 0.19
SHMT2-235ENST00000557740 BMP8AQ7Z5Y6 402 aa16.21■□□□□ 0.19
SHMT2-235ENST00000557740 NOSTRINQ8IVI9 506 aa16.21■□□□□ 0.19
SHMT2-235ENST00000557740 TDRD5Q8NAT2 981 aaKnown RBP16.21■□□□□ 0.19
SHMT2-235ENST00000557740 FBXO18Q8NFZ0 1043 aa16.21■□□□□ 0.19
SHMT2-235ENST00000557740 FBXL18Q96ME1 805 aa16.21■□□□□ 0.19
SHMT2-235ENST00000557740 KLHL5Q96PQ7 755 aa16.21■□□□□ 0.19
SHMT2-235ENST00000557740 PRMT7Q9NVM4 692 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-235ENST00000557740 MARCH5Q9NX47 278 aa16.21■□□□□ 0.19
SHMT2-235ENST00000557740 SSX2IPQ9Y2D8 614 aa16.21■□□□□ 0.19
SHMT2-235ENST00000557740 ZDBF2Q9HCK1 2354 aa16.2■□□□□ 0.18
SHMT2-235ENST00000557740 CNPP09543 421 aaKnown RBP16.2■□□□□ 0.18
SHMT2-235ENST00000557740 RPA1P27694 616 aa16.2■□□□□ 0.18
SHMT2-235ENST00000557740 TRAPPC10P48553 1259 aa16.2■□□□□ 0.18
SHMT2-235ENST00000557740 GLUD2P49448 558 aa16.2■□□□□ 0.18
SHMT2-235ENST00000557740 CLCN4P51793 760 aa16.2■□□□□ 0.18
SHMT2-235ENST00000557740 DSC1Q08554 894 aa16.2■□□□□ 0.18
SHMT2-235ENST00000557740 CDCA2Q69YH5 1023 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-235ENST00000557740 PADI6Q6TGC4 694 aa16.2■□□□□ 0.18
SHMT2-235ENST00000557740 TMC5Q6UXY8 1006 aa16.2■□□□□ 0.18
SHMT2-235ENST00000557740 CDR2LQ86X02 465 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-235ENST00000557740 PRIMPOLQ96LW4 560 aa16.2■□□□□ 0.18
SHMT2-235ENST00000557740 RPS6KC1Q96S38 1066 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms