RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 TRAF3IP3Q9Y228 551 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 CDY2AQ9Y6F7 541 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 ASAP2O43150 1006 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 ACTN1P12814 892 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 USP8P40818 1118 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 CDR1P51861 262 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 EFNA5P52803 228 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 ALCAMQ13740 583 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 SNRNP35Q16560 246 aaKnown RBP11.11□□□□□ -0.63
NEK9-205ENST00000555405 MAN2A1Q16706 1144 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 MAP3K21Q5TCX8 1036 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 TWF2Q6IBS0 349 aaKnown RBP11.11□□□□□ -0.63
NEK9-205ENST00000555405 CACNA2D4Q7Z3S7 1137 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 RSPH3Q86UC2 560 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 GOLGA5Q8TBA6 731 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 NTPCRQ9BSD7 190 aaKnown RBP11.11□□□□□ -0.63
NEK9-205ENST00000555405 PPP1R12CQ9BZL4 782 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 C2orf40Q9H1Z8 148 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 GTF2IRD1Q9UHL9 959 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 IGKV6-21A0A0C4DH24 114 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 MSCO60682 206 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 KPNA6O60684 536 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 PPP1R37O75864 691 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 TPM1P09493 284 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 CTCFP49711 727 aaPredicted RBP11.11□□□□□ -0.63
NEK9-205ENST00000555405 PRMT2P55345 433 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 RAPGEF1Q13905 1077 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 EDRF1Q3B7T1 1238 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 PPP4R3CPQ6ZMV5 832 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 TMEM130Q8N3G9 435 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 TMEM40Q8WWA1 233 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 LSM14BQ9BX40 385 aaKnown RBP11.11□□□□□ -0.63
NEK9-205ENST00000555405 IFT122Q9HBG6 1241 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 RTN4Q9NQC3 1192 aaKnown RBP11.11□□□□□ -0.63
NEK9-205ENST00000555405 KLK14Q9P0G3 267 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 PARP2Q9UGN5 583 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 LIMA1Q9UHB6 759 aaKnown RBP11.11□□□□□ -0.63
NEK9-205ENST00000555405 KCNG1Q9UIX4 513 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 ATP11BQ9Y2G3 1177 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 GRIN2DO15399 1336 aa11.11□□□□□ -0.63
NEK9-205ENST00000555405 A0A1W2PQ45 241 aaPredicted RBP11.1□□□□□ -0.63
NEK9-205ENST00000555405 A0A1W2PQY0 241 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 ZNF233A6NK53 670 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 GAS2O43903 313 aaKnown RBP11.1□□□□□ -0.63
NEK9-205ENST00000555405 LRRN2O75325 713 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 ADRB2P07550 413 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 KRT19P08727 400 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 TFAMQ00059 246 aaKnown RBP11.1□□□□□ -0.63
NEK9-205ENST00000555405 SESTD1Q86VW0 696 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 TMEM192Q8IY95 271 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 SLC17A8Q8NDX2 589 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 DIS3LQ8TF46 1054 aaKnown RBP11.1□□□□□ -0.63
NEK9-205ENST00000555405 CEP63Q96MT8 703 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 ADPGKQ9BRR6 497 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 NPTXRO95502 500 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 ARF4P18085 180 aaPredicted RBP11.1□□□□□ -0.63
NEK9-205ENST00000555405 EIF4BP23588 611 aaKnown RBP11.1□□□□□ -0.63
NEK9-205ENST00000555405 CASP14P31944 242 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 VAMP7P51809 220 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 NR1I3Q14994 352 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 SPECC1LQ69YQ0 1117 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 SARM1Q6SZW1 724 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 C17orf53Q8N3J3 647 aaPredicted RBP11.1□□□□□ -0.63
NEK9-205ENST00000555405 U2AF1L4Q8WU68 220 aaKnown RBP11.1□□□□□ -0.63
NEK9-205ENST00000555405 TMEM106CQ9BVX2 250 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 OSBPL7Q9BZF2 842 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 PRDM5Q9NQX1 630 aaPredicted RBP11.1□□□□□ -0.63
NEK9-205ENST00000555405 RBAKQ9NYW8 714 aaPredicted RBP11.1□□□□□ -0.63
NEK9-205ENST00000555405 R3HCC1Q9Y3T6 440 aaKnown RBP11.1□□□□□ -0.63
NEK9-205ENST00000555405 RPS6KA5O75582 802 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 SLC9A1P19634 815 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 CCL23P55773 120 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 RBL2Q08999 1139 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 ARHGAP44Q17R89 818 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 BMT2Q1RMZ1 405 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 GJB7Q6PEY0 223 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 GPD1LQ8N335 351 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 KLHDC9Q8NEP7 349 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 MRFAP1L1Q96HT8 127 aa11.1□□□□□ -0.63
NEK9-205ENST00000555405 A0A1B0GTH6 734 aa11.09□□□□□ -0.63
NEK9-205ENST00000555405 LGALS16A8MUM7 142 aa11.09□□□□□ -0.63
NEK9-205ENST00000555405 HAS3O00219 553 aa11.09□□□□□ -0.63
NEK9-205ENST00000555405 ACKR2O00590 384 aa11.09□□□□□ -0.63
NEK9-205ENST00000555405 SFPQP23246 707 aaKnown RBP eCLIP11.09□□□□□ -0.63
NEK9-205ENST00000555405 AKAP5P24588 427 aa11.09□□□□□ -0.63
NEK9-205ENST00000555405 MBTD1Q05BQ5 628 aa11.09□□□□□ -0.63
NEK9-205ENST00000555405 TSR1Q2NL82 804 aaKnown RBP11.09□□□□□ -0.63
NEK9-205ENST00000555405 GLRA4Q5JXX5 417 aa11.09□□□□□ -0.63
NEK9-205ENST00000555405 ACO2Q99798 780 aaKnown RBP11.09□□□□□ -0.63
NEK9-205ENST00000555405 HAPLN2Q9GZV7 340 aa11.09□□□□□ -0.63
NEK9-205ENST00000555405 SMIM35A0A1B0GVV1 85 aa11.09□□□□□ -0.63
NEK9-205ENST00000555405 GNA14O95837 355 aa11.09□□□□□ -0.63
NEK9-205ENST00000555405 AFPP02771 609 aaKnown RBP11.09□□□□□ -0.63
NEK9-205ENST00000555405 KRT9P35527 623 aa11.09□□□□□ -0.63
NEK9-205ENST00000555405 RTP1P59025 263 aa11.09□□□□□ -0.63
NEK9-205ENST00000555405 VSTM4Q8IW00 320 aa11.09□□□□□ -0.63
NEK9-205ENST00000555405 NEK11Q8NG66 645 aa11.09□□□□□ -0.63
NEK9-205ENST00000555405 PI4K2AQ9BTU6 479 aa11.09□□□□□ -0.63
NEK9-205ENST00000555405 METTL14Q9HCE5 456 aaKnown RBP11.09□□□□□ -0.63
NEK9-205ENST00000555405 PRMT7Q9NVM4 692 aaPredicted RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms