RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 MATR3P43243 847 aaKnown RBP eCLIP12.67□□□□□ -0.38
SHMT2-212ENST00000554467 CASP8Q14790 479 aa12.67□□□□□ -0.38
SHMT2-212ENST00000554467 EMC2Q15006 297 aa12.67□□□□□ -0.38
SHMT2-212ENST00000554467 SNRNP35Q16560 246 aaKnown RBP12.67□□□□□ -0.38
SHMT2-212ENST00000554467 ARHGEF19Q8IW93 802 aa12.67□□□□□ -0.38
SHMT2-212ENST00000554467 COG1Q8WTW3 980 aa12.67□□□□□ -0.38
SHMT2-212ENST00000554467 POMGNT1Q8WZA1 660 aa12.67□□□□□ -0.38
SHMT2-212ENST00000554467 PCYT2Q99447 389 aa12.67□□□□□ -0.38
SHMT2-212ENST00000554467 MKNK1Q9BUB5 465 aa12.67□□□□□ -0.38
SHMT2-212ENST00000554467 ATP6V0A4Q9HBG4 840 aa12.67□□□□□ -0.38
SHMT2-212ENST00000554467 ACP6Q9NPH0 428 aa12.67□□□□□ -0.38
SHMT2-212ENST00000554467 NFASCO94856 1347 aa12.67□□□□□ -0.38
SHMT2-212ENST00000554467 LOXHD1Q8IVV2 1947 aa12.67□□□□□ -0.38
SHMT2-212ENST00000554467 LRRIQ4A6NIV6 560 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 PDE2AO00408 941 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-212ENST00000554467 EVI5O60447 810 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 SYF2O95926 243 aaKnown RBP12.66□□□□□ -0.38
SHMT2-212ENST00000554467 KCTD19Q17RG1 926 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-212ENST00000554467 GPAT2Q6NUI2 795 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 TAS1R3Q7RTX0 852 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 MSL3Q8N5Y2 521 aaKnown RBP12.66□□□□□ -0.38
SHMT2-212ENST00000554467 CEP112Q8N8E3 955 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 MSANTD4Q8NCY6 345 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 SYN2Q92777 582 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-212ENST00000554467 SLC10A4Q96EP9 437 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 NUCKS1Q9H1E3 243 aaKnown RBP12.66□□□□□ -0.38
SHMT2-212ENST00000554467 UBE2TQ9NPD8 197 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-212ENST00000554467 PDGFCQ9NRA1 345 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 FBXO40Q9UH90 709 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 A0A087WUV0 522 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-212ENST00000554467 GLTPD2A6NH11 291 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 TACC1O75410 805 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 MAPTP10636 758 aaKnown RBP12.66□□□□□ -0.38
SHMT2-212ENST00000554467 TCF7P36402 384 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-212ENST00000554467 MAP2K2P36507 400 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 JAM2P57087 298 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 PPIL2Q13356 520 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 HSDL1Q3SXM5 330 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 SEZ6Q53EL9 994 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 GLYCTKQ8IVS8 523 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 RDM1Q8NG50 284 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 ASAP3Q8TDY4 903 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 FGD4Q96M96 766 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 TSGA10Q9BZW7 698 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 F8VZ95 297 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 CXCL11O14625 94 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 DGAT1O75907 488 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 OATP04181 439 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 HARSP12081 509 aaKnown RBP12.66□□□□□ -0.38
SHMT2-212ENST00000554467 NFIL3Q16649 462 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 XKR3Q5GH77 459 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 ARMC9Q7Z3E5 817 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 EHBP1Q8NDI1 1231 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 U2AF1L4Q8WU68 220 aaKnown RBP12.66□□□□□ -0.38
SHMT2-212ENST00000554467 KIFAP3Q92845 792 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 L3MBTL3Q96JM7 780 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-212ENST00000554467 FAM213AQ9BRX8 229 aa12.66□□□□□ -0.38
SHMT2-212ENST00000554467 LIG3P49916 1009 aa12.65□□□□□ -0.38
SHMT2-212ENST00000554467 RNASE9P60153 205 aaKnown RBP12.65□□□□□ -0.38
SHMT2-212ENST00000554467 PALB2Q86YC2 1186 aa12.65□□□□□ -0.38
SHMT2-212ENST00000554467 SLC9A9Q8IVB4 645 aa12.65□□□□□ -0.38
SHMT2-212ENST00000554467 MAP4K3Q8IVH8 894 aa12.65□□□□□ -0.38
SHMT2-212ENST00000554467 TRAPPC12Q8WVT3 735 aa12.65□□□□□ -0.38
SHMT2-212ENST00000554467 ZBTB45Q96K62 511 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-212ENST00000554467 MMP19Q99542 508 aa12.65□□□□□ -0.38
SHMT2-212ENST00000554467 GPR88Q9GZN0 384 aa12.65□□□□□ -0.38
SHMT2-212ENST00000554467 KCNH4Q9UQ05 1017 aa12.65□□□□□ -0.38
SHMT2-212ENST00000554467 IGSF9BQ9UPX0 1349 aa12.65□□□□□ -0.38
SHMT2-212ENST00000554467 FOXN3O00409 490 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-212ENST00000554467 PALMO75781 387 aa12.65□□□□□ -0.38
SHMT2-212ENST00000554467 CALCAP01258 141 aa12.65□□□□□ -0.38
SHMT2-212ENST00000554467 KCTD2Q14681 263 aa12.65□□□□□ -0.38
SHMT2-212ENST00000554467 INTS8Q75QN2 995 aaKnown RBP12.65□□□□□ -0.38
SHMT2-212ENST00000554467 GSPT2Q8IYD1 628 aaKnown RBP12.65□□□□□ -0.38
SHMT2-212ENST00000554467 GLG1Q92896 1179 aa12.65□□□□□ -0.38
SHMT2-212ENST00000554467 TMEM117Q9H0C3 514 aa12.65□□□□□ -0.38
SHMT2-212ENST00000554467 PDLIM7Q9NR12 457 aa12.65□□□□□ -0.38
SHMT2-212ENST00000554467 APEX2Q9UBZ4 518 aa12.65□□□□□ -0.38
SHMT2-212ENST00000554467 SOCS7O14512 581 aa12.65□□□□□ -0.39
SHMT2-212ENST00000554467 ERLIN1O75477 346 aa12.65□□□□□ -0.39
SHMT2-212ENST00000554467 STAM2O75886 525 aa12.65□□□□□ -0.39
SHMT2-212ENST00000554467 PPP2R5AQ15172 486 aa12.65□□□□□ -0.39
SHMT2-212ENST00000554467 ALKBH5Q6P6C2 394 aaKnown RBP12.65□□□□□ -0.39
SHMT2-212ENST00000554467 TRIM58Q8NG06 486 aa12.65□□□□□ -0.39
SHMT2-212ENST00000554467 LMO3Q8TAP4 145 aa12.65□□□□□ -0.39
SHMT2-212ENST00000554467 SEMA4DQ92854 862 aa12.65□□□□□ -0.39
SHMT2-212ENST00000554467 MS4A14Q96JA4 679 aa12.65□□□□□ -0.39
SHMT2-212ENST00000554467 IFT74Q96LB3 600 aa12.65□□□□□ -0.39
SHMT2-212ENST00000554467 MED4Q9NPJ6 270 aa12.65□□□□□ -0.39
SHMT2-212ENST00000554467 MAFBQ9Y5Q3 323 aaPredicted RBP12.65□□□□□ -0.39
SHMT2-212ENST00000554467 DDX3XO00571 662 aaKnown RBP eCLIP12.64□□□□□ -0.398e-15■■□□□ 14.3
SHMT2-212ENST00000554467 EDN1P05305 212 aa12.64□□□□□ -0.39
SHMT2-212ENST00000554467 GJB1P08034 283 aa12.64□□□□□ -0.39
SHMT2-212ENST00000554467 STAT1P42224 750 aa12.64□□□□□ -0.39
SHMT2-212ENST00000554467 ACOT2P49753 483 aa12.64□□□□□ -0.39
SHMT2-212ENST00000554467 C2orf54Q08AI8 447 aa12.64□□□□□ -0.39
SHMT2-212ENST00000554467 WHAMMP3Q1A5X7 153 aa12.64□□□□□ -0.39
SHMT2-212ENST00000554467 HSP90B2PQ58FF3 399 aa12.64□□□□□ -0.39
SHMT2-212ENST00000554467 PAPD7Q5XG87 772 aaKnown RBP12.64□□□□□ -0.39
SHMT2-212ENST00000554467 ZNF662Q6ZS27 426 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms