RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 C1RP00736 705 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 SOD2P04179 222 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 YWHABP31946 246 aaKnown RBP13.21□□□□□ -0.29
CKAP4-202ENST00000552828 POU5F1BQ06416 359 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 DSC1Q08554 894 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 SPIRE1Q08AE8 756 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 TDGQ13569 410 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 CYP26C1Q6V0L0 522 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 CCDC149Q6ZUS6 474 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 OTUD6AQ7L8S5 288 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 FERMT3Q86UX7 667 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 COLGALT2Q8IYK4 626 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 RNF168Q8IYW5 571 aaPredicted RBP13.21□□□□□ -0.29
CKAP4-202ENST00000552828 CCDC51Q96ER9 411 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 SNX27Q96L92 541 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 FAM193BQ96PV7 902 aaPredicted RBP13.21□□□□□ -0.29
CKAP4-202ENST00000552828 RPS6KC1Q96S38 1066 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 NAP1L4Q99733 375 aaKnown RBP13.21□□□□□ -0.29
CKAP4-202ENST00000552828 LXNQ9BS40 222 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 KCNK12Q9HB15 430 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 RXFP1Q9HBX9 757 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 MARCH5Q9NX47 278 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 SSX2IPQ9Y2D8 614 aa13.21□□□□□ -0.29
CKAP4-202ENST00000552828 LARGE1O95461 756 aa13.2□□□□□ -0.3
CKAP4-202ENST00000552828 POMCP01189 267 aa13.2□□□□□ -0.3
CKAP4-202ENST00000552828 NPR3P17342 541 aa13.2□□□□□ -0.3
CKAP4-202ENST00000552828 AXLP30530 894 aa13.2□□□□□ -0.3
CKAP4-202ENST00000552828 PTENP60484 403 aa13.2□□□□□ -0.3
CKAP4-202ENST00000552828 EMC2Q15006 297 aa13.2□□□□□ -0.3
CKAP4-202ENST00000552828 KIAA0319Q5VV43 1072 aa13.2□□□□□ -0.3
CKAP4-202ENST00000552828 CWF19L1Q69YN2 538 aaKnown RBP13.2□□□□□ -0.3
CKAP4-202ENST00000552828 IFNLR1Q8IU57 520 aaPredicted RBP13.2□□□□□ -0.3
CKAP4-202ENST00000552828 RNF149Q8NC42 400 aa13.2□□□□□ -0.3
CKAP4-202ENST00000552828 HERC2P3Q9BVR0 1158 aa13.2□□□□□ -0.3
CKAP4-202ENST00000552828 RNF39Q9H2S5 420 aa13.2□□□□□ -0.3
CKAP4-202ENST00000552828 MFSD1Q9H3U5 465 aa13.2□□□□□ -0.3
CKAP4-202ENST00000552828 ZSWIM4Q9H7M6 989 aa13.2□□□□□ -0.3
CKAP4-202ENST00000552828 SH2B1Q9NRF2 756 aaPredicted RBP13.2□□□□□ -0.3
CKAP4-202ENST00000552828 RGL1Q9NZL6 768 aa13.2□□□□□ -0.3
CKAP4-202ENST00000552828 IGSF9Q9P2J2 1179 aa13.2□□□□□ -0.3
CKAP4-202ENST00000552828 DPP7Q9UHL4 492 aa13.2□□□□□ -0.3
CKAP4-202ENST00000552828 IPPQ9Y573 584 aa13.2□□□□□ -0.3
CKAP4-202ENST00000552828 PTPRZ1P23471 2315 aaPredicted RBP13.2□□□□□ -0.3
CKAP4-202ENST00000552828 STK36Q9NRP7 1315 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 MYO10Q9HD67 2058 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 PRR23AA6NEV1 266 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 ARL5CA6NH57 179 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 ZBTB39O15060 712 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 TEX28O15482 410 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 CCNT1O60563 726 aaKnown RBP13.19□□□□□ -0.3
CKAP4-202ENST00000552828 TSPAN1O60635 241 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 N4BP1O75113 896 aaKnown RBP13.19□□□□□ -0.3
CKAP4-202ENST00000552828 SLITRK3O94933 977 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 LYPLA2O95372 231 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 CTDNEP1O95476 244 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 SSBP05455 408 aaKnown RBP eCLIP13.19□□□□□ -0.3
CKAP4-202ENST00000552828 URODP06132 367 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 ITGA4P13612 1032 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 AOC1P19801 751 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 MXD4Q14582 209 aaPredicted RBP13.19□□□□□ -0.3
CKAP4-202ENST00000552828 ASCL5Q7RTU5 278 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 TAS1R1Q7RTX1 841 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 GPR65Q8IYL9 337 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 SLFN12Q8IYM2 578 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 OXER1Q8TDS5 423 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 HDAC7Q8WUI4 952 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 WASF1Q92558 559 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 HSD17B14Q9BPX1 270 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 EIF2AQ9BY44 585 aaKnown RBP13.19□□□□□ -0.3
CKAP4-202ENST00000552828 WDR6Q9NNW5 1121 aaKnown RBP13.19□□□□□ -0.3
CKAP4-202ENST00000552828 XPNPEP1Q9NQW7 623 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 MAN1C1Q9NR34 630 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 CHST7Q9NS84 486 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 ORC3Q9UBD5 711 aaPredicted RBP13.19□□□□□ -0.3
CKAP4-202ENST00000552828 DUSP12Q9UNI6 340 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 ZNF292O60281 2723 aa13.19□□□□□ -0.3
CKAP4-202ENST00000552828 GVINP1Q7Z2Y8 2422 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 ERLIN2O94905 339 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 ADH1AP07327 375 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 XBP1P17861 261 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 MCM2P49736 904 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 DSG1Q02413 1049 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 AMHR2Q16671 573 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 XKR9Q5GH70 373 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 NOTUMQ6P988 496 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 PIK3AP1Q6ZUJ8 805 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 POTEDQ86YR6 584 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 DYDC2Q96IM9 177 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 GAD1Q99259 594 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 MTRQ99707 1265 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 NFKBIZQ9BYH8 718 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 CSRNP2Q9H175 543 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 MIOSQ9NXC5 875 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 EPS15L1Q9UBC2 864 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 GIT1Q9Y2X7 761 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 PRG3Q9Y2Y8 225 aaPredicted RBP13.18□□□□□ -0.3
CKAP4-202ENST00000552828 DENND4AQ7Z401 1863 aa13.18□□□□□ -0.3
CKAP4-202ENST00000552828 PLXNA3P51805 1871 aa13.17□□□□□ -0.3
CKAP4-202ENST00000552828 CCDC195A0A1B0GUA6 201 aa13.17□□□□□ -0.3
CKAP4-202ENST00000552828 SPDYE4A6NLX3 237 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms