RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 TM9SF2Q99805 663 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 HAUS7Q99871 368 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 BACH2Q9BYV9 841 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 INO80BQ9C086 356 aaPredicted RBP3.09□□□□□ -1.91
PTCH1-223ENST00000551623 NYXQ9GZU5 481 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 AURKAIP1Q9NWT8 199 aaPredicted RBP3.09□□□□□ -1.91
PTCH1-223ENST00000551623 CGGBP1Q9UFW8 167 aaPredicted RBP3.09□□□□□ -1.91
PTCH1-223ENST00000551623 ZNF214Q9UL59 606 aaPredicted RBP3.09□□□□□ -1.91
PTCH1-223ENST00000551623 OAZ3Q9UMX2 235 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 X6R8D5 127 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 DDX60Q8IY21 1712 aaKnown RBP3.09□□□□□ -1.91
PTCH1-223ENST00000551623 FAM205AQ6ZU69 1335 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 SIPA1L3O60292 1781 aaPredicted RBP3.09□□□□□ -1.91
PTCH1-223ENST00000551623 LAMA2P24043 3122 aaKnown RBP3.08□□□□□ -1.92
PTCH1-223ENST00000551623 TCRBV5S2A0A599 114 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 PSMD14O00487 310 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 HGSO14964 777 aaPredicted RBP3.08□□□□□ -1.92
PTCH1-223ENST00000551623 NPHP1O15259 732 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 NTSR2O95665 410 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 RECKO95980 971 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 NUDT3O95989 172 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 A1BGP04217 495 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 CHGBP05060 677 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 MMP14P50281 582 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 SP3Q02447 781 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 CRHR2Q13324 411 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 USP10Q14694 798 aaKnown RBP3.08□□□□□ -1.92
PTCH1-223ENST00000551623 ARHGEF6Q15052 776 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 INF2Q27J81 1249 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 PHF19Q5T6S3 580 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 LAIR1Q6GTX8 287 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 PRIMA1Q86XR5 153 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 TTC5Q8N0Z6 440 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 RBBP8NLQ8NC74 664 aaPredicted RBP3.08□□□□□ -1.92
PTCH1-223ENST00000551623 AGBL3Q8NEM8 1001 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 CD99L2Q8TCZ2 262 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 KLHL6Q8WZ60 621 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 RPGRQ92834 1020 aaKnown RBP3.08□□□□□ -1.92
PTCH1-223ENST00000551623 RBM17Q96I25 401 aaKnown RBP3.08□□□□□ -1.92
PTCH1-223ENST00000551623 KATNBL1Q9H079 304 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 KLHL25Q9H0H3 589 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 GBP3Q9H0R5 595 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 ZCCHC17Q9NP64 241 aaKnown RBP3.08□□□□□ -1.92
PTCH1-223ENST00000551623 GPRC5CQ9NQ84 441 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 CEP72Q9P209 647 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 RBPJLQ9UBG7 517 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 PCDHB10Q9UN67 800 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 NIP7Q9Y221 180 aaKnown RBP eCLIP3.08□□□□□ -1.92
PTCH1-223ENST00000551623 PCDHB4Q9Y5E5 795 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 PTCH2Q9Y6C5 1203 aa3.08□□□□□ -1.92
PTCH1-223ENST00000551623 A0A0A6YYK5 440 aaPredicted RBP3.07□□□□□ -1.92
PTCH1-223ENST00000551623 H0Y858 1186 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 PPM1GO15355 546 aaPredicted RBP3.07□□□□□ -1.92
PTCH1-223ENST00000551623 CDC14BO60729 498 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 PPM1BO75688 479 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 KNG1P01042 644 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 ZNF888P0CJ79 500 aaPredicted RBP3.07□□□□□ -1.92
PTCH1-223ENST00000551623 IMPDH2P12268 514 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 ERCC3P19447 782 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 HIBADHP31937 336 aaKnown RBP3.07□□□□□ -1.92
PTCH1-223ENST00000551623 RPL11P62913 178 aaKnown RBP3.07□□□□□ -1.92
PTCH1-223ENST00000551623 CYP4F3Q08477 520 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 DUSP8Q13202 625 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 TCIRG1Q13488 830 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 EPHA10Q5JZY3 1008 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 COLEC12Q5KU26 742 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 PAPD7Q5XG87 772 aaKnown RBP3.07□□□□□ -1.92
PTCH1-223ENST00000551623 SYCE2Q6PIF2 218 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 DPP8Q6V1X1 898 aaPredicted RBP3.07□□□□□ -1.92
PTCH1-223ENST00000551623 CEP68Q76N32 757 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 Q7L0L9 218 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 ADAT2Q7Z6V5 191 aaKnown RBP3.07□□□□□ -1.92
PTCH1-223ENST00000551623 PROSER1Q86XN7 944 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 ZNF34Q8IZ26 560 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 RPUSD2Q8IZ73 545 aaKnown RBP3.07□□□□□ -1.92
PTCH1-223ENST00000551623 TDHQ8IZJ6 230 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 ARHGEF39Q8N4T4 335 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 DTX3Q8N9I9 347 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 COPS5Q92905 334 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 TRMT2BQ96GJ1 504 aaKnown RBP3.07□□□□□ -1.92
PTCH1-223ENST00000551623 LGR4Q9BXB1 951 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 TLR9Q9NR96 1032 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 GINM1Q9NU53 330 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 HSPBP1Q9NZL4 362 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 ABCC4O15439 1325 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 ASTN2O75129 1339 aaPredicted RBP3.07□□□□□ -1.92
PTCH1-223ENST00000551623 UBN2Q6ZU65 1347 aa3.07□□□□□ -1.92
PTCH1-223ENST00000551623 UBE2Q2LH0YL09 131 aa3.06□□□□□ -1.92
PTCH1-223ENST00000551623 TADA3O75528 432 aa3.06□□□□□ -1.92
PTCH1-223ENST00000551623 PEX11BO96011 259 aa3.06□□□□□ -1.92
PTCH1-223ENST00000551623 COL4A1P02462 1669 aa3.06□□□□□ -1.92
PTCH1-223ENST00000551623 SNRPA1P09661 255 aaKnown RBP3.06□□□□□ -1.92
PTCH1-223ENST00000551623 GUCY2CP25092 1073 aa3.06□□□□□ -1.92
PTCH1-223ENST00000551623 LACTBP83111 547 aaPredicted RBP3.06□□□□□ -1.92
PTCH1-223ENST00000551623 MAP3K12Q12852 859 aa3.06□□□□□ -1.92
PTCH1-223ENST00000551623 HLFQ16534 295 aa3.06□□□□□ -1.92
PTCH1-223ENST00000551623 RNF151Q2KHN1 245 aa3.06□□□□□ -1.92
PTCH1-223ENST00000551623 SLC4A8Q2Y0W8 1093 aa3.06□□□□□ -1.92
PTCH1-223ENST00000551623 PARP10Q53GL7 1025 aa3.06□□□□□ -1.92
PTCH1-223ENST00000551623 ZNF362Q5T0B9 420 aaPredicted RBP3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms