RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 CHST15Q7LFX5 561 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-205ENST00000550592 GRAMD1CQ8IYS0 662 aa6.28□□□□□ -1.4
LIMA1-205ENST00000550592 ADGRG2Q8IZP9 1017 aa6.28□□□□□ -1.4
LIMA1-205ENST00000550592 POU5F2Q8N7G0 328 aa6.28□□□□□ -1.4
LIMA1-205ENST00000550592 MARCH10Q8NA82 808 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-205ENST00000550592 PLA2G15Q8NCC3 412 aa6.28□□□□□ -1.4
LIMA1-205ENST00000550592 ADAMTS17Q8TE56 1095 aa6.28□□□□□ -1.4
LIMA1-205ENST00000550592 FAM193BQ96PV7 902 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-205ENST00000550592 UIMC1Q96RL1 719 aa6.28□□□□□ -1.4
LIMA1-205ENST00000550592 C7orf25Q9BPX7 421 aa6.28□□□□□ -1.4
LIMA1-205ENST00000550592 OR10A2Q9H208 303 aa6.28□□□□□ -1.4
LIMA1-205ENST00000550592 DDX20Q9UHI6 824 aaKnown RBP6.28□□□□□ -1.4
LIMA1-205ENST00000550592 CFAP20Q9Y6A4 193 aaKnown RBP6.28□□□□□ -1.4
LIMA1-205ENST00000550592 A0A1B0GTL3 188 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 H3BML4 177 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 MYL1P05976 194 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 KIR2DL3P43628 341 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 AFF3P51826 1226 aaKnown RBP6.27□□□□□ -1.41
LIMA1-205ENST00000550592 WNT3AP56704 352 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 DSC2Q02487 901 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 IL10RAQ13651 578 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 KCNA10Q16322 511 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 MST1LQ2TV78 715 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 AGBL4Q5VU57 503 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 OGFOD2Q6N063 350 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 SLC4A10Q6U841 1118 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 Q6ZVL8 140 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 MIGA2Q7L4E1 593 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 MSL3Q8N5Y2 521 aaKnown RBP6.27□□□□□ -1.41
LIMA1-205ENST00000550592 LINC01356Q8N9X3 169 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 TP53I13Q8NBR0 393 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-205ENST00000550592 TIFAQ96CG3 184 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 MBD6Q96DN6 1003 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 C14orf93Q9H972 538 aaKnown RBP6.27□□□□□ -1.41
LIMA1-205ENST00000550592 PTPN22Q9Y2R2 807 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 RNF114Q9Y508 228 aa6.27□□□□□ -1.41
LIMA1-205ENST00000550592 FRMPD2Q68DX3 1309 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-205ENST00000550592 SGTAO43765 313 aa6.26□□□□□ -1.41
LIMA1-205ENST00000550592 PRAMEF4O60810 478 aa6.26□□□□□ -1.41
LIMA1-205ENST00000550592 ALDH1A2O94788 518 aa6.26□□□□□ -1.41
LIMA1-205ENST00000550592 ENDOD1O94919 500 aa6.26□□□□□ -1.41
LIMA1-205ENST00000550592 ZNF888P0CJ79 500 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-205ENST00000550592 TRIM27P14373 513 aa6.26□□□□□ -1.41
LIMA1-205ENST00000550592 ADSLP30566 484 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-205ENST00000550592 PURAQ00577 322 aaKnown RBP6.26□□□□□ -1.41
LIMA1-205ENST00000550592 ZNF648Q5T619 568 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-205ENST00000550592 PPP4R3AQ6IN85 833 aa6.26□□□□□ -1.41
LIMA1-205ENST00000550592 ZNF761Q86XN6 746 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-205ENST00000550592 TMEM151BQ8IW70 566 aa6.26□□□□□ -1.41
LIMA1-205ENST00000550592 FAM43AQ8N2R8 423 aa6.26□□□□□ -1.41
LIMA1-205ENST00000550592 ZBTB34Q8NCN2 500 aa6.26□□□□□ -1.41
LIMA1-205ENST00000550592 GCDHQ92947 438 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-205ENST00000550592 SLC7A6OSQ96CW6 309 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-205ENST00000550592 LCORQ96JN0 433 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-205ENST00000550592 SARGQ9BW04 601 aa6.26□□□□□ -1.41
LIMA1-205ENST00000550592 KIAA1683Q9H0B3 1180 aa6.26□□□□□ -1.41
LIMA1-205ENST00000550592 MAN1C1Q9NR34 630 aa6.26□□□□□ -1.41
LIMA1-205ENST00000550592 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-205ENST00000550592 SIK3Q9Y2K2 1263 aa6.26□□□□□ -1.41
LIMA1-205ENST00000550592 PCDHB1Q9Y5F3 818 aa6.26□□□□□ -1.41
LIMA1-205ENST00000550592 PCDHA13Q9Y5I0 950 aa6.26□□□□□ -1.41
LIMA1-205ENST00000550592 DISP3Q9P2K9 1392 aa6.26□□□□□ -1.41
LIMA1-205ENST00000550592 CEP164Q9UPV0 1460 aa6.26□□□□□ -1.41
LIMA1-205ENST00000550592 MTSS1O43312 755 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 TUSC2O75896 110 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 GASTP01350 101 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 RPLP2P05387 115 aaKnown RBP6.25□□□□□ -1.41
LIMA1-205ENST00000550592 ECHS1P30084 290 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 RAP1GAPP47736 663 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 SLC6A9P48067 706 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 ADCY7P51828 1080 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 USP14P54578 494 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 GALEQ14376 348 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 ZMAT1Q5H9K5 638 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 USP30Q70CQ3 517 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 OVCH2Q7RTZ1 564 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 SRGAP1Q7Z6B7 1085 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 TTC7BQ86TV6 843 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 DENND1CQ8IV53 801 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 NSUN6Q8TEA1 469 aaKnown RBP6.25□□□□□ -1.41
LIMA1-205ENST00000550592 SLC6A15Q9H2J7 730 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 BCO1Q9HAY6 547 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 JADE2Q9NQC1 790 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 DDX21Q9NR30 783 aaKnown RBP eCLIP6.25□□□□□ -1.41
LIMA1-205ENST00000550592 ING3Q9NXR8 418 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 FAM184BQ9ULE4 1060 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 ZDHHC9Q9Y397 364 aa6.25□□□□□ -1.41
LIMA1-205ENST00000550592 RBM8AQ9Y5S9 174 aaKnown RBP6.25□□□□□ -1.41
LIMA1-205ENST00000550592 NPIPB6E9PJ23 425 aa6.24□□□□□ -1.41
LIMA1-205ENST00000550592 SLC16A6O15403 523 aa6.24□□□□□ -1.41
LIMA1-205ENST00000550592 UBXN7O94888 489 aa6.24□□□□□ -1.41
LIMA1-205ENST00000550592 HRGP04196 525 aa6.24□□□□□ -1.41
LIMA1-205ENST00000550592 ALDH2P05091 517 aa6.24□□□□□ -1.41
LIMA1-205ENST00000550592 RRADP55042 308 aa6.24□□□□□ -1.41
LIMA1-205ENST00000550592 HGFACQ04756 655 aa6.24□□□□□ -1.41
LIMA1-205ENST00000550592 NFYCQ13952 458 aa6.24□□□□□ -1.41
LIMA1-205ENST00000550592 TBR1Q16650 682 aa6.24□□□□□ -1.41
LIMA1-205ENST00000550592 THEMIS2Q5TEJ8 643 aa6.24□□□□□ -1.41
LIMA1-205ENST00000550592 KSR2Q6VAB6 950 aa6.24□□□□□ -1.41
LIMA1-205ENST00000550592 GPR155Q7Z3F1 870 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms