RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 PPP2R3AQ06190 1150 aa17.52■□□□□ 0.39
PRPF40A-212ENST00000545856 NCAPHQ15003 741 aa17.52■□□□□ 0.39
PRPF40A-212ENST00000545856 TRIM60Q495X7 471 aa17.52■□□□□ 0.39
PRPF40A-212ENST00000545856 FBXO47Q5MNV8 452 aa17.52■□□□□ 0.39
PRPF40A-212ENST00000545856 ATF7IP2Q5U623 682 aa17.52■□□□□ 0.39
PRPF40A-212ENST00000545856 ANKRD40Q6AI12 368 aa17.52■□□□□ 0.39
PRPF40A-212ENST00000545856 MPZL3Q6UWV2 235 aa17.52■□□□□ 0.39
PRPF40A-212ENST00000545856 LRRC8DQ7L1W4 858 aa17.52■□□□□ 0.39
PRPF40A-212ENST00000545856 FILIP1Q7Z7B0 1213 aa17.52■□□□□ 0.39
PRPF40A-212ENST00000545856 DHX40Q8IX18 779 aaKnown RBP17.52■□□□□ 0.39
PRPF40A-212ENST00000545856 AOPEPQ8N6M6 819 aa17.52■□□□□ 0.39
PRPF40A-212ENST00000545856 NOC4LQ9BVI4 516 aaKnown RBP17.52■□□□□ 0.39
PRPF40A-212ENST00000545856 TRAIPQ9BWF2 469 aa17.52■□□□□ 0.39
PRPF40A-212ENST00000545856 METTL14Q9HCE5 456 aaKnown RBP17.52■□□□□ 0.39
PRPF40A-212ENST00000545856 CLDN3O15551 220 aa17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 TSPAN1O60635 241 aa17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 CHRNA1P02708 482 aa17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 MCF2P10911 925 aa17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 MCCD1P59942 119 aaPredicted RBP17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 MCL1Q07820 350 aa17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 KCNA1Q09470 495 aa17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 ADAM9Q13443 819 aa17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 ARMCX5Q6P1M9 558 aa17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 LRRC55Q6ZSA7 311 aa17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 XXYLT1Q8NBI6 393 aa17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 APBB2Q92870 758 aa17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 WNT8BQ93098 351 aa17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 FBXL18Q96ME1 805 aa17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 FTHL17Q9BXU8 183 aa17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 MINDY3Q9H8M7 445 aa17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 PTPRHQ9HD43 1115 aa17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 RNF216Q9NWF9 866 aaPredicted RBP17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 FRMD4BQ9Y2L6 1034 aa17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.51■□□□□ 0.39
PRPF40A-212ENST00000545856 ALPK3Q96L96 1907 aa17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 A0A0B4J269 797 aa17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 KIAA0355O15063 1070 aa17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 ATN1P54259 1190 aaPredicted RBP17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 TMEM62Q0P6H9 643 aa17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 FAAP100Q0VG06 881 aa17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 PAK2Q13177 524 aa17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 NOLC1Q14978 699 aaKnown RBP eCLIP17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 ZNF618Q5T7W0 954 aa17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 CDKAL1Q5VV42 579 aa17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 SLC27A1Q6PCB7 646 aa17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 TRAF7Q6Q0C0 670 aa17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 PPP1R13LQ8WUF5 828 aa17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 RSPH1Q8WYR4 309 aa17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 POMGNT1Q8WZA1 660 aa17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 DUSP9Q99956 384 aaKnown RBP17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 HTATIP2Q9BUP3 242 aa17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 HIPK3Q9H422 1215 aa17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 MAGEC2Q9UBF1 373 aaPredicted RBP17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 GINS2Q9Y248 185 aa17.5■□□□□ 0.39
PRPF40A-212ENST00000545856 TRIM49BA6NDI0 452 aa17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 EPB41P11171 864 aaKnown RBP17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 SKIP12755 728 aa17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 ZNF18P17022 549 aa17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 ARF4P18085 180 aaPredicted RBP17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 PSMC2P35998 433 aaKnown RBP17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 RAB27AP51159 221 aa17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 PMS1P54277 932 aaKnown RBP17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 STX17P56962 302 aa17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 TMEM132AQ24JP5 1023 aa17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 INTS8Q75QN2 995 aaKnown RBP17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 FRMD5Q7Z6J6 570 aa17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 FAM228AQ86W67 206 aa17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 TMEM40Q8WWA1 233 aa17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 ABHD8Q96I13 439 aa17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 MED15Q96RN5 788 aa17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 TSPAN18Q96SJ8 248 aa17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 TARS2Q9BW92 718 aaKnown RBP17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 HSPBP1Q9NZL4 362 aa17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 ATP11BQ9Y2G3 1177 aa17.49■□□□□ 0.39
PRPF40A-212ENST00000545856 FSD2A1L4K1 749 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 GOLGA6L3A6NEY3 463 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 OGTO15294 1046 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 EXTL3O43909 919 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 EXOC3O60645 756 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 PFKMP08237 780 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 CTSHP09668 335 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 IQCF3P0C7M6 154 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 EN2P19622 333 aaPredicted RBP17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 ADSSP30520 456 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 GSE1Q14687 1217 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 LPIN1Q14693 890 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 SURF1Q15526 300 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 LRRC26Q2I0M4 334 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 ZNF568Q3ZCX4 644 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 SLC39A4Q6P5W5 647 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 GAS2L3Q86XJ1 694 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 HACE1Q8IYU2 909 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 GPD1LQ8N335 351 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 MSTO1Q9BUK6 570 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 SRRTQ9BXP5 876 aaKnown RBP17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 ERVK-5Q9HDB9 667 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 TMEM39AQ9NV64 488 aa17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 AGO2Q9UKV8 859 aaKnown RBP17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 NOC2LQ9Y3T9 749 aaKnown RBP17.48■□□□□ 0.39
PRPF40A-212ENST00000545856 LRRC10BA6NIK2 292 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms