RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 NT5C3AQ9H0P0 336 aa14.38□□□□□ -0.11
USP28-212ENST00000544750 ARHGEF3Q9NR81 526 aa14.38□□□□□ -0.11
USP28-212ENST00000544750 CHST7Q9NS84 486 aa14.38□□□□□ -0.11
USP28-212ENST00000544750 PPP4R2Q9NY27 417 aa14.38□□□□□ -0.11
USP28-212ENST00000544750 DPP7Q9UHL4 492 aa14.38□□□□□ -0.11
USP28-212ENST00000544750 SSX2IPQ9Y2D8 614 aa14.38□□□□□ -0.11
USP28-212ENST00000544750 COL4A3BPQ9Y5P4 624 aa14.38□□□□□ -0.11
USP28-212ENST00000544750 VWA8A3KMH1 1905 aa14.38□□□□□ -0.11
USP28-212ENST00000544750 POTEMA6NI47 508 aa14.37□□□□□ -0.11
USP28-212ENST00000544750 STK25O00506 426 aa14.37□□□□□ -0.11
USP28-212ENST00000544750 CPA1P15085 419 aa14.37□□□□□ -0.11
USP28-212ENST00000544750 GLUD2P49448 558 aa14.37□□□□□ -0.11
USP28-212ENST00000544750 STARD6P59095 220 aa14.37□□□□□ -0.11
USP28-212ENST00000544750 PLA2G4FQ68DD2 849 aa14.37□□□□□ -0.11
USP28-212ENST00000544750 LILRA6Q6PI73 481 aa14.37□□□□□ -0.11
USP28-212ENST00000544750 ZC3H14Q6PJT7 736 aaKnown RBP14.37□□□□□ -0.11
USP28-212ENST00000544750 SRGAP1Q7Z6B7 1085 aa14.37□□□□□ -0.11
USP28-212ENST00000544750 FBXL16Q8N461 479 aa14.37□□□□□ -0.11
USP28-212ENST00000544750 DCLK2Q8N568 766 aa14.37□□□□□ -0.11
USP28-212ENST00000544750 CCDC148Q8NFR7 591 aa14.37□□□□□ -0.11
USP28-212ENST00000544750 TBCKQ8TEA7 893 aa14.37□□□□□ -0.11
USP28-212ENST00000544750 RUBCNQ92622 972 aa14.37□□□□□ -0.11
USP28-212ENST00000544750 FAM193BQ96PV7 902 aaPredicted RBP14.37□□□□□ -0.11
USP28-212ENST00000544750 JPH2Q9BR39 696 aaPredicted RBP14.37□□□□□ -0.11
USP28-212ENST00000544750 RNF26Q9BY78 433 aaPredicted RBP14.37□□□□□ -0.11
USP28-212ENST00000544750 PLEKHA4Q9H4M7 779 aa14.37□□□□□ -0.11
USP28-212ENST00000544750 DHX33Q9H6R0 707 aaKnown RBP14.37□□□□□ -0.11
USP28-212ENST00000544750 MIOSQ9NXC5 875 aa14.37□□□□□ -0.11
USP28-212ENST00000544750 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.37□□□□□ -0.11
USP28-212ENST00000544750 VPS54Q9P1Q0 977 aa14.37□□□□□ -0.11
USP28-212ENST00000544750 PRG3Q9Y2Y8 225 aaPredicted RBP14.37□□□□□ -0.11
USP28-212ENST00000544750 SIT1Q9Y3P8 196 aa14.37□□□□□ -0.11
USP28-212ENST00000544750 DDX11L8A8MPP1 907 aa14.36□□□□□ -0.11
USP28-212ENST00000544750 F8W810 466 aa14.36□□□□□ -0.11
USP28-212ENST00000544750 M0R2N6 131 aa14.36□□□□□ -0.11
USP28-212ENST00000544750 TDP2O95551 362 aa14.36□□□□□ -0.11
USP28-212ENST00000544750 MYBP10242 640 aa14.36□□□□□ -0.11
USP28-212ENST00000544750 NPEPPSP55786 919 aa14.36□□□□□ -0.11
USP28-212ENST00000544750 KRT32Q14532 448 aa14.36□□□□□ -0.11
USP28-212ENST00000544750 SPECC1Q5M775 1068 aa14.36□□□□□ -0.11
USP28-212ENST00000544750 GPR65Q8IYL9 337 aa14.36□□□□□ -0.11
USP28-212ENST00000544750 ZNF579Q8NAF0 562 aaKnown RBP14.36□□□□□ -0.11
USP28-212ENST00000544750 PJA1Q8NG27 643 aa14.36□□□□□ -0.11
USP28-212ENST00000544750 KCNB2Q92953 911 aa14.36□□□□□ -0.11
USP28-212ENST00000544750 AGXT2Q9BYV1 514 aa14.36□□□□□ -0.11
USP28-212ENST00000544750 PRKD2Q9BZL6 878 aa14.36□□□□□ -0.11
USP28-212ENST00000544750 RNF39Q9H2S5 420 aa14.36□□□□□ -0.11
USP28-212ENST00000544750 SH3GLB2Q9NR46 395 aa14.36□□□□□ -0.11
USP28-212ENST00000544750 ACACBO00763 2458 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 EML1O00423 815 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 TGM5O43548 720 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 LRRN2O75325 713 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 HMGB1P09429 215 aaKnown RBP14.35□□□□□ -0.11
USP28-212ENST00000544750 SPATA31D3P0C874 917 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 IFNAR1P17181 557 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 OR1G1P47890 313 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 PSMC5P62195 406 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 ELMSAN1Q6PJG2 1045 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 DCLRE1AQ6PJP8 1040 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 MOXD1Q6UVY6 613 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 SPATA31D4Q6ZUB0 917 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 Q6ZUG5 572 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 CNNM3Q8NE01 707 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 PRPF31Q8WWY3 499 aaKnown RBP14.35□□□□□ -0.11
USP28-212ENST00000544750 BRF1Q92994 677 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 RPP25Q9BUL9 199 aaKnown RBP14.35□□□□□ -0.11
USP28-212ENST00000544750 DDX23Q9BUQ8 820 aaKnown RBP14.35□□□□□ -0.11
USP28-212ENST00000544750 FOXQ1Q9C009 403 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 UBN1Q9NPG3 1134 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 ZDHHC7Q9NXF8 308 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 FNIP2Q9P278 1114 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 WRAP73Q9P2S5 460 aaPredicted RBP14.35□□□□□ -0.11
USP28-212ENST00000544750 NAP1L2Q9ULW6 460 aaPredicted RBP14.35□□□□□ -0.11
USP28-212ENST00000544750 IPPQ9Y573 584 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 NUMBLQ9Y6R0 609 aa14.35□□□□□ -0.11
USP28-212ENST00000544750 TRIP11Q15643 1979 aa14.34□□□□□ -0.11
USP28-212ENST00000544750 ARL5CA6NH57 179 aa14.34□□□□□ -0.11
USP28-212ENST00000544750 GAS2O43903 313 aaKnown RBP14.34□□□□□ -0.11
USP28-212ENST00000544750 CDC45O75419 566 aa14.34□□□□□ -0.11
USP28-212ENST00000544750 ITGA4P13612 1032 aa14.34□□□□□ -0.11
USP28-212ENST00000544750 RFX1P22670 979 aa14.34□□□□□ -0.11
USP28-212ENST00000544750 LAMTOR4Q0VGL1 99 aa14.34□□□□□ -0.11
USP28-212ENST00000544750 NPY5RQ15761 445 aa14.34□□□□□ -0.11
USP28-212ENST00000544750 PALB2Q86YC2 1186 aa14.34□□□□□ -0.11
USP28-212ENST00000544750 GSTCDQ8NEC7 633 aa14.34□□□□□ -0.11
USP28-212ENST00000544750 GAD1Q99259 594 aa14.34□□□□□ -0.11
USP28-212ENST00000544750 EIF2AQ9BY44 585 aaKnown RBP14.34□□□□□ -0.11
USP28-212ENST00000544750 C22orf23Q9BZE7 217 aa14.34□□□□□ -0.11
USP28-212ENST00000544750 GPR62Q9BZJ7 368 aa14.34□□□□□ -0.11
USP28-212ENST00000544750 VAV3Q9UKW4 847 aa14.34□□□□□ -0.11
USP28-212ENST00000544750 PPME1Q9Y570 386 aa14.34□□□□□ -0.11
USP28-212ENST00000544750 SRGAP2CP0DJJ0 459 aa14.33□□□□□ -0.12
USP28-212ENST00000544750 MLH1P40692 756 aa14.33□□□□□ -0.12
USP28-212ENST00000544750 QARSP47897 775 aaKnown RBP14.33□□□□□ -0.12
USP28-212ENST00000544750 SCNN1GP51170 649 aa14.33□□□□□ -0.12
USP28-212ENST00000544750 AKAP17AQ02040 695 aaKnown RBP14.33□□□□□ -0.12
USP28-212ENST00000544750 PPP2R5CQ13362 524 aa14.33□□□□□ -0.12
USP28-212ENST00000544750 ZNF528Q3MIS6 628 aa14.33□□□□□ -0.12
USP28-212ENST00000544750 FUT10Q6P4F1 479 aa14.33□□□□□ -0.12
USP28-212ENST00000544750 GET4Q7L5D6 327 aaPredicted RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms