RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 SLC9A1P19634 815 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 PON1P27169 355 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 SLC39A4Q6P5W5 647 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 GBP6Q6ZN66 633 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 INTS8Q75QN2 995 aaKnown RBP15.56■□□□□ 0.08
VPS33A-209ENST00000544349 MSL3Q8N5Y2 521 aaKnown RBP15.56■□□□□ 0.08
VPS33A-209ENST00000544349 EMID1Q96A84 441 aaPredicted RBP15.56■□□□□ 0.08
VPS33A-209ENST00000544349 GANQ9H2C0 597 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 PCDHA13Q9Y5I0 950 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 MOCS3O95396 460 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 LCA5LO95447 670 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 KRT13P13646 458 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 SCP2P22307 547 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 FMO5P49326 533 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 GYS2P54840 703 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 POLR2FP61218 127 aaKnown RBP15.56■□□□□ 0.08
VPS33A-209ENST00000544349 KIF5AQ12840 1032 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 MAP2K5Q13163 448 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 ACVR2BQ13705 512 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 BRDTQ58F21 947 aaPredicted RBP15.56■□□□□ 0.08
VPS33A-209ENST00000544349 HGSNATQ68CP4 663 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 EXOC8Q8IYI6 725 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 ZSWIM2Q8NEG5 633 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 PPTC7Q8NI37 304 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 CCDC102AQ96A19 550 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 NLRC4Q9NPP4 1024 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 SALL4Q9UJQ4 1053 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 L1RE1Q9UN81 338 aa15.56■□□□□ 0.08
VPS33A-209ENST00000544349 IGKV6-21A0A0C4DH24 114 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 ERICH4A6NGS2 130 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 HBP1O60381 514 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 ECM2O94769 699 aaPredicted RBP15.55■□□□□ 0.08
VPS33A-209ENST00000544349 GFPT1Q06210 699 aaPredicted RBP15.55■□□□□ 0.08
VPS33A-209ENST00000544349 SPA17Q15506 151 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 DEPTORQ8TB45 409 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 NUCKS1Q9H1E3 243 aaKnown RBP15.55■□□□□ 0.08
VPS33A-209ENST00000544349 GPBP1L1Q9HC44 474 aaPredicted RBP15.55■□□□□ 0.08
VPS33A-209ENST00000544349 PDE11AQ9HCR9 933 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 ERAP1Q9NZ08 941 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 ANO9A1A5B4 782 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 LRRIQ4A6NIV6 560 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 GAS2O43903 313 aaKnown RBP15.55■□□□□ 0.08
VPS33A-209ENST00000544349 TRIM49P0CI25 452 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 TRIM49CP0CI26 452 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 ACTN1P12814 892 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 SMPD1P17405 629 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 VAMP7P51809 220 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 SREBF2Q12772 1141 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 DRP2Q13474 957 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 ASTE1Q2TB18 679 aaPredicted RBP15.55■□□□□ 0.08
VPS33A-209ENST00000544349 DUSP28Q4G0W2 176 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 KLHDC7AQ5VTJ3 777 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 IER5Q5VY09 327 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 AFG1LQ8WV93 481 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 ZFYVE28Q9HCC9 887 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 GCNT4Q9P109 453 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 TRPC6Q9Y210 931 aa15.55■□□□□ 0.08
VPS33A-209ENST00000544349 SIP14410 1827 aa15.54■□□□□ 0.08
VPS33A-209ENST00000544349 HNRNPDLO14979 420 aaKnown RBP15.54■□□□□ 0.08
VPS33A-209ENST00000544349 N4BP1O75113 896 aaKnown RBP15.54■□□□□ 0.08
VPS33A-209ENST00000544349 LGALS2P05162 132 aa15.54■□□□□ 0.08
VPS33A-209ENST00000544349 MCCD1P59942 119 aaPredicted RBP15.54■□□□□ 0.08
VPS33A-209ENST00000544349 C2orf54Q08AI8 447 aa15.54■□□□□ 0.08
VPS33A-209ENST00000544349 MKRN4PQ13434 485 aaPredicted RBP15.54■□□□□ 0.08
VPS33A-209ENST00000544349 CBWD6Q4V339 395 aa15.54■□□□□ 0.08
VPS33A-209ENST00000544349 CBWD3Q5JTY5 395 aa15.54■□□□□ 0.08
VPS33A-209ENST00000544349 CBWD5Q5RIA9 395 aa15.54■□□□□ 0.08
VPS33A-209ENST00000544349 IQSEC1Q6DN90 963 aa15.54■□□□□ 0.08
VPS33A-209ENST00000544349 TCP11Q8WWU5 503 aa15.54■□□□□ 0.08
VPS33A-209ENST00000544349 SYN2Q92777 582 aaPredicted RBP15.54■□□□□ 0.08
VPS33A-209ENST00000544349 TSGA10Q9BZW7 698 aa15.54■□□□□ 0.08
VPS33A-209ENST00000544349 RNPEPQ9H4A4 650 aa15.54■□□□□ 0.08
VPS33A-209ENST00000544349 DEF6Q9H4E7 631 aa15.54■□□□□ 0.08
VPS33A-209ENST00000544349 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.54■□□□□ 0.08
VPS33A-209ENST00000544349 ABT1Q9ULW3 272 aaKnown RBP15.54■□□□□ 0.08
VPS33A-209ENST00000544349 GOLGA8IPA6NC78 632 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 GOLGA8JA6NMD2 632 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 K7ERI5 159 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 KIF3CO14782 793 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 AKR1B10O60218 316 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 ERLIN1O75477 346 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 HOXC6P09630 235 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 UCHL3P15374 230 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 GARTP22102 1010 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 CYP2C19P33261 490 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 DLG4P78352 724 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 STRN3Q13033 797 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 CAPSQ13938 189 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 WDR93Q6P2C0 686 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 GSPT2Q8IYD1 628 aaKnown RBP15.53■□□□□ 0.08
VPS33A-209ENST00000544349 SMC1BQ8NDV3 1235 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 PRPF31Q8WWY3 499 aaKnown RBP15.53■□□□□ 0.08
VPS33A-209ENST00000544349 POMGNT1Q8WZA1 660 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 SAAL1Q96ER3 474 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 BICD1Q96G01 975 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 FBXL18Q96ME1 805 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 JPH2Q9BR39 696 aaPredicted RBP15.53■□□□□ 0.08
VPS33A-209ENST00000544349 TMEM134Q9H6X4 195 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 SIX2Q9NPC8 291 aa15.53■□□□□ 0.08
VPS33A-209ENST00000544349 FBXL5Q9UKA1 691 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms