RNA–Protein interactions for RNA: ENST00000543555.5

MSH2-206, Transcript of mutS homolog 2, humanhuman

TSL 2 BASIC

Gene MSH2, Length 3,024 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-206ENST00000543555 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.05■□□□□ 01e-6■■■■□ 26.4
MSH2-206ENST00000543555 NTPCRQ9BSD7 190 aaKnown RBP15.05■□□□□ 0
MSH2-206ENST00000543555 C17orf75Q9HAS0 396 aa15.05■□□□□ 0
MSH2-206ENST00000543555 AMFRQ9UKV5 643 aa15.05■□□□□ 0
MSH2-206ENST00000543555 NOC2LQ9Y3T9 749 aaKnown RBP15.05■□□□□ 0
MSH2-206ENST00000543555 ESYT3A0FGR9 886 aa15.05■□□□□ -0
MSH2-206ENST00000543555 ANKRD62A6NC57 917 aa15.05■□□□□ -0
MSH2-206ENST00000543555 NFASCO94856 1347 aa15.05■□□□□ -0
MSH2-206ENST00000543555 PSAPP07602 524 aa15.05■□□□□ -0
MSH2-206ENST00000543555 PAK2Q13177 524 aa15.05■□□□□ -0
MSH2-206ENST00000543555 RASGEF1CQ8N431 466 aa15.05■□□□□ -0
MSH2-206ENST00000543555 SAAL1Q96ER3 474 aa15.05■□□□□ -0
MSH2-206ENST00000543555 THAP2Q9H0W7 228 aa15.05■□□□□ -0
MSH2-206ENST00000543555 PLEKHA4Q9H4M7 779 aa15.05■□□□□ -0
MSH2-206ENST00000543555 ACAD9Q9H845 621 aa15.05■□□□□ -0
MSH2-206ENST00000543555 A1CFQ9NQ94 594 aaKnown RBP15.05■□□□□ -0
MSH2-206ENST00000543555 SWSAP1Q6NVH7 229 aa15.04■□□□□ -0
MSH2-206ENST00000543555 CDHR1Q96JP9 859 aa15.04■□□□□ -0
MSH2-206ENST00000543555 JPH1Q9HDC5 661 aaPredicted RBP15.04■□□□□ -0
MSH2-206ENST00000543555 NFU1Q9UMS0 254 aa15.04■□□□□ -0
MSH2-206ENST00000543555 PFASO15067 1338 aa15.04■□□□□ -0
MSH2-206ENST00000543555 SOX10P56693 466 aa15.04■□□□□ -0
MSH2-206ENST00000543555 TSEN2Q8NCE0 465 aaKnown RBP15.04■□□□□ -0
MSH2-206ENST00000543555 CASKIN2Q8WXE0 1202 aa15.04■□□□□ -0
MSH2-206ENST00000543555 IFT81Q8WYA0 676 aa15.04■□□□□ -0
MSH2-206ENST00000543555 TMOD4Q9NZQ9 345 aa15.04■□□□□ -0
MSH2-206ENST00000543555 TELO2Q9Y4R8 837 aa15.04■□□□□ -0
MSH2-206ENST00000543555 MAP2K1Q02750 393 aaPredicted RBP15.03■□□□□ -0
MSH2-206ENST00000543555 SLC39A4Q6P5W5 647 aa15.03■□□□□ -0
MSH2-206ENST00000543555 PARD3BQ8TEW8 1205 aa15.03■□□□□ -0
MSH2-206ENST00000543555 KAT5Q92993 513 aa15.03■□□□□ -0
MSH2-206ENST00000543555 SLC9A2Q9UBY0 812 aa15.03■□□□□ -0
MSH2-206ENST00000543555 STAM2O75886 525 aa15.03■□□□□ -0
MSH2-206ENST00000543555 DGAT1O75907 488 aa15.03■□□□□ -0
MSH2-206ENST00000543555 CCDC60Q8IWA6 550 aaPredicted RBP15.03■□□□□ -0
MSH2-206ENST00000543555 MCPH1Q8NEM0 835 aa15.03■□□□□ -0
MSH2-206ENST00000543555 AFAP1L1Q8TED9 768 aa15.03■□□□□ -0
MSH2-206ENST00000543555 CCDC127Q96BQ5 260 aa15.03■□□□□ -0
MSH2-206ENST00000543555 AP1M1Q9BXS5 423 aa15.03■□□□□ -0
MSH2-206ENST00000543555 PDLIM7Q9NR12 457 aa15.03■□□□□ -0
MSH2-206ENST00000543555 SSC5DA1L4H1 1573 aa15.03■□□□□ -0
MSH2-206ENST00000543555 SPATA31C2B4DYI2 1134 aa15.03■□□□□ -0
MSH2-206ENST00000543555 CCDC188H7C350 402 aa15.03■□□□□ -0
MSH2-206ENST00000543555 ACTR2P61160 394 aa15.03■□□□□ -0
MSH2-206ENST00000543555 SP4Q02446 784 aa15.03■□□□□ -0
MSH2-206ENST00000543555 MKRN3Q13064 507 aaKnown RBP15.03■□□□□ -0
MSH2-206ENST00000543555 ALS2CLQ60I27 953 aa15.03■□□□□ -0
MSH2-206ENST00000543555 KRT39Q6A163 491 aa15.03■□□□□ -0
MSH2-206ENST00000543555 RPUSD2Q8IZ73 545 aaKnown RBP15.03■□□□□ -0
MSH2-206ENST00000543555 GOLGA6L1Q8N7Z2 621 aa15.03■□□□□ -0
MSH2-206ENST00000543555 FBXL18Q96ME1 805 aa15.03■□□□□ -0
MSH2-206ENST00000543555 KREMEN1Q96MU8 473 aa15.03■□□□□ -0
MSH2-206ENST00000543555 ISCUQ9H1K1 167 aa15.03■□□□□ -0
MSH2-206ENST00000543555 XPNPEP1Q9NQW7 623 aa15.03■□□□□ -0
MSH2-206ENST00000543555 SEPT9Q9UHD8 586 aaPredicted RBP15.03■□□□□ -0
MSH2-206ENST00000543555 ADGRA3Q8IWK6 1321 aa15.02■□□□□ -0
MSH2-206ENST00000543555 SPDYE16A6NNV3 312 aaPredicted RBP15.02■□□□□ -0
MSH2-206ENST00000543555 FAM153BP0C7A2 387 aa15.02■□□□□ -0
MSH2-206ENST00000543555 RTP1P59025 263 aa15.02■□□□□ -0
MSH2-206ENST00000543555 PRKCEQ02156 737 aa15.02■□□□□ -0
MSH2-206ENST00000543555 GNPTABQ3T906 1256 aa15.02■□□□□ -0
MSH2-206ENST00000543555 FAM153CQ494X1 144 aa15.02■□□□□ -0
MSH2-206ENST00000543555 NOL9Q5SY16 702 aaKnown RBP15.02■□□□□ -0
MSH2-206ENST00000543555 ABHD15Q6UXT9 468 aa15.02■□□□□ -0
MSH2-206ENST00000543555 RHOT2Q8IXI1 618 aa15.02■□□□□ -0
MSH2-206ENST00000543555 FAM71AQ8IYT1 594 aa15.02■□□□□ -0
MSH2-206ENST00000543555 TMC2Q8TDI7 906 aa15.02■□□□□ -0
MSH2-206ENST00000543555 SEMA4DQ92854 862 aa15.02■□□□□ -0
MSH2-206ENST00000543555 CLMNQ96JQ2 1002 aa15.02■□□□□ -0
MSH2-206ENST00000543555 TMEM8AQ9HCN3 771 aa15.02■□□□□ -0
MSH2-206ENST00000543555 FAM153AQ9UHL3 310 aa15.02■□□□□ -0
MSH2-206ENST00000543555 COG5Q9UP83 839 aa15.02■□□□□ -0
MSH2-206ENST00000543555 COQ4Q9Y3A0 265 aa15.02■□□□□ -0
MSH2-206ENST00000543555 AFG3L2Q9Y4W6 797 aa15.02■□□□□ -0
MSH2-206ENST00000543555 MYPNQ86TC9 1320 aa15.02□□□□□ -0.01
MSH2-206ENST00000543555 FAM170AA1A519 330 aa15.02□□□□□ -0.01
MSH2-206ENST00000543555 KRIT1O00522 736 aa15.02□□□□□ -0.01
MSH2-206ENST00000543555 DDX3YO15523 660 aaKnown RBP15.02□□□□□ -0.01
MSH2-206ENST00000543555 CLSTN1O94985 981 aa15.02□□□□□ -0.01
MSH2-206ENST00000543555 USP8P40818 1118 aa15.02□□□□□ -0.01
MSH2-206ENST00000543555 HADHBP55084 474 aaKnown RBP15.02□□□□□ -0.01
MSH2-206ENST00000543555 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.02□□□□□ -0.01
MSH2-206ENST00000543555 PPM1KQ8N3J5 372 aa15.02□□□□□ -0.01
MSH2-206ENST00000543555 EPS8L1Q8TE68 723 aa15.02□□□□□ -0.01
MSH2-206ENST00000543555 L3MBTL3Q96JM7 780 aaPredicted RBP15.02□□□□□ -0.01
MSH2-206ENST00000543555 MFSD14AQ96MC6 490 aa15.02□□□□□ -0.01
MSH2-206ENST00000543555 SH3GL2Q99962 352 aa15.02□□□□□ -0.01
MSH2-206ENST00000543555 MAF1Q9H063 256 aa15.02□□□□□ -0.01
MSH2-206ENST00000543555 CYP26B1Q9NR63 512 aa15.02□□□□□ -0.01
MSH2-206ENST00000543555 HOXC10Q9NYD6 342 aa15.02□□□□□ -0.01
MSH2-206ENST00000543555 PPP2R3BQ9Y5P8 575 aa15.02□□□□□ -0.01
MSH2-206ENST00000543555 ARID2Q68CP9 1835 aa15.01□□□□□ -0.01
MSH2-206ENST00000543555 SGPL1O95470 568 aa15.01□□□□□ -0.01
MSH2-206ENST00000543555 FTLP02792 175 aaPredicted RBP15.01□□□□□ -0.01
MSH2-206ENST00000543555 CAPN2P17655 700 aa15.01□□□□□ -0.01
MSH2-206ENST00000543555 TRADDQ15628 312 aa15.01□□□□□ -0.01
MSH2-206ENST00000543555 POMGNT1Q8WZA1 660 aa15.01□□□□□ -0.01
MSH2-206ENST00000543555 ATP6V0A4Q9HBG4 840 aa15.01□□□□□ -0.01
MSH2-206ENST00000543555 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.01□□□□□ -0.01
MSH2-206ENST00000543555 TTC7AQ9ULT0 858 aaPredicted RBP15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms