RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 CLGNO14967 610 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 POLR3GO15318 223 aaPredicted RBP10.66□□□□□ -0.7
SS18-205ENST00000542420 SYF2O95926 243 aaKnown RBP10.66□□□□□ -0.7
SS18-205ENST00000542420 SUPT20HL2P0C7V6 817 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 PPP3CAQ08209 521 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 PPFIA1Q13136 1202 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 SNRNP35Q16560 246 aaKnown RBP10.66□□□□□ -0.7
SS18-205ENST00000542420 TBC1D10BQ4KMP7 808 aaPredicted RBP10.66□□□□□ -0.7
SS18-205ENST00000542420 FAM102BQ5T8I3 360 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 GJB7Q6PEY0 223 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 SAMD7Q7Z3H4 446 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 MAATS1Q7Z4T9 603 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 ZNF677Q86XU0 584 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 EXOC8Q8IYI6 725 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.66□□□□□ -0.7
SS18-205ENST00000542420 CCDC26Q8TAB7 109 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 PARD3BQ8TEW8 1205 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 SEC14L1Q92503 715 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 CCDC102AQ96A19 550 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 NCAPGQ9BPX3 1015 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 CBWD1Q9BRT8 395 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 FAM129AQ9BZQ8 928 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 TMEM117Q9H0C3 514 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 GPRC5DQ9NZD1 345 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 IGKV6D-21A0A0A0MT36 114 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 MYO1CO00159 1063 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 SLC16A4O15374 487 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 HEXIM1O94992 359 aaKnown RBP10.66□□□□□ -0.7
SS18-205ENST00000542420 EGFRP00533 1210 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 CNGA1P29973 690 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 GBP1P32455 592 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 RFC5P40937 340 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 GCNT1Q02742 428 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 TMEM132BQ14DG7 1078 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 SLFN12LQ6IEE8 588 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 KSR1Q8IVT5 923 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 GPD1LQ8N335 351 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 CYP26B1Q9NR63 512 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 HOMER2Q9NSB8 354 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 GABBR1Q9UBS5 961 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 ZSWIM8A7E2V4 1837 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 SPDYE16A6NNV3 312 aaPredicted RBP10.65□□□□□ -0.7
SS18-205ENST00000542420 FOXN3O00409 490 aaPredicted RBP10.65□□□□□ -0.7
SS18-205ENST00000542420 HSF2BPO75031 334 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 LDHAP00338 332 aaKnown RBP10.65□□□□□ -0.7
SS18-205ENST00000542420 CXCR5P32302 372 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 GPC5P78333 572 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 PLS1Q14651 629 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 STXBP2Q15833 593 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 EMC10Q5UCC4 262 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 SAMD1Q6SPF0 538 aaPredicted RBP10.65□□□□□ -0.7
SS18-205ENST00000542420 LRIG3Q6UXM1 1119 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 DAAM2Q86T65 1068 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 RIOX2Q8IUF8 465 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 GLYCTKQ8IVS8 523 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 METTL13Q8N6R0 699 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 FBXL13Q8NEE6 735 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 SLC35G2Q8TBE7 412 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 AFAP1L1Q8TED9 768 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 CEP170P1Q96L14 293 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 NT5C1BQ96P26 610 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 NIFKQ9BYG3 293 aaKnown RBP10.65□□□□□ -0.7
SS18-205ENST00000542420 TAF1DQ9H5J8 278 aaPredicted RBP10.65□□□□□ -0.7
SS18-205ENST00000542420 SUGCTQ9HAC7 445 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 UBE2TQ9NPD8 197 aaPredicted RBP10.65□□□□□ -0.7
SS18-205ENST00000542420 A1CFQ9NQ94 594 aaKnown RBP10.65□□□□□ -0.7
SS18-205ENST00000542420 PKD2L1Q9P0L9 805 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 VPS18Q9P253 973 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 UVRAGQ9P2Y5 699 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 RIPK3Q9Y572 518 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 MAFBQ9Y5Q3 323 aaPredicted RBP10.65□□□□□ -0.7
SS18-205ENST00000542420 SYNGAP1Q96PV0 1343 aa10.65□□□□□ -0.7
SS18-205ENST00000542420 DENND3A2RUS2 1198 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 DDX3YO15523 660 aaKnown RBP10.64□□□□□ -0.71
SS18-205ENST00000542420 GAS2O43903 313 aaKnown RBP10.64□□□□□ -0.71
SS18-205ENST00000542420 RNF40O75150 1001 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 IVLP07476 585 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 ADRB2P07550 413 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 MYBL2P10244 700 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 TGFB3P10600 412 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 EDNRBP24530 442 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 NAMPTP43490 491 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 HMGCS2P54868 508 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 BPIFB4P59827 614 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 ACTR2P61160 394 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 CYP24A1Q07973 514 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 ANGEL2Q5VTE6 544 aaKnown RBP10.64□□□□□ -0.71
SS18-205ENST00000542420 C15orf39Q6ZRI6 1047 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 SND1Q7KZF4 910 aaKnown RBP eCLIP10.64□□□□□ -0.71
SS18-205ENST00000542420 LRRC45Q96CN5 670 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 TRIM11Q96F44 468 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 MPHOSPH6Q99547 160 aaKnown RBP10.64□□□□□ -0.71
SS18-205ENST00000542420 TMEM134Q9H6X4 195 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 FAM114A2Q9NRY5 505 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 NOCTQ9UK39 431 aaKnown RBP10.64□□□□□ -0.71
SS18-205ENST00000542420 BCS1LQ9Y276 419 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 FAN1Q9Y2M0 1017 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 NOC2LQ9Y3T9 749 aaKnown RBP10.64□□□□□ -0.71
SS18-205ENST00000542420 FAM187AA6NFU0 413 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 EXTL3O43909 919 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms