RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 LRRC14Q15048 493 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 ACSBG2Q5FVE4 666 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 TCP11X2Q5H9J9 407 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 KLHDC7AQ5VTJ3 777 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 CGB2Q6NT52 195 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 KLHDC10Q6PID8 442 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 RBM44Q6ZP01 1051 aaKnown RBP10.11□□□□□ -0.79
CLIP1-214ENST00000540539 TUBA1AQ71U36 451 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 MCF2L2Q86YR7 1114 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 APPBP2Q92624 585 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 USP6NLQ92738 828 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 INPP4AQ96PE3 977 aaPredicted RBP10.11□□□□□ -0.79
CLIP1-214ENST00000540539 NEURL2Q9BR09 285 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 PARVBQ9HBI1 364 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 AGPAT5Q9NUQ2 364 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 KLHL14Q9P2G3 628 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 PCDHB2Q9Y5E7 798 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 TAF1LQ8IZX4 1826 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 FUOMA2VDF0 154 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 CPLX1O14810 134 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 ZNF862O60290 1169 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 MARK3P27448 753 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 RNASE9P60153 205 aaKnown RBP10.11□□□□□ -0.79
CLIP1-214ENST00000540539 TNNC1P63316 161 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 COG7P83436 770 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 GRIN1Q05586 938 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 EIF2B5Q13144 721 aaKnown RBP10.11□□□□□ -0.79
CLIP1-214ENST00000540539 SPA17Q15506 151 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 CRY1Q16526 586 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 WDR45BQ5MNZ6 344 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 C1orf228Q6PIY5 440 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 IZUMO2Q6UXV1 221 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 INTS8Q75QN2 995 aaKnown RBP10.11□□□□□ -0.79
CLIP1-214ENST00000540539 ANO5Q75V66 913 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 RIC3Q7Z5B4 369 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 SCHIP1Q9P0W5 487 aaPredicted RBP10.11□□□□□ -0.79
CLIP1-214ENST00000540539 STX18Q9P2W9 335 aaKnown RBP10.11□□□□□ -0.79
CLIP1-214ENST00000540539 TLL2Q9Y6L7 1015 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 KCNJ18B7U540 433 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 PLSCR1O15162 318 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 T-ENOLP0DO92 83 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 SLC16A2P36021 539 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 CRKLP46109 303 aaKnown RBP10.1□□□□□ -0.79
CLIP1-214ENST00000540539 KCNJ12Q14500 433 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 ZNF423Q2M1K9 1284 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 KAZNQ674X7 775 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 UNC13DQ70J99 1090 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 LRP10Q7Z4F1 713 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 VPS37DQ86XT2 251 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 NELFCDQ8IXH7 590 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.1□□□□□ -0.79
CLIP1-214ENST00000540539 SPERTQ8NA61 448 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 GOLM1Q8NBJ4 401 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 LINC00116Q8NCU8 138 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 GIMAP1Q8WWP7 306 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 ZNF274Q96GC6 653 aaPredicted RBP10.1□□□□□ -0.79
CLIP1-214ENST00000540539 PRPF18Q99633 342 aaKnown RBP10.1□□□□□ -0.79
CLIP1-214ENST00000540539 NUP85Q9BW27 656 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 CCSER1Q9C0I3 900 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 AZI2Q9H6S1 392 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 ZMAT5Q9UDW3 170 aaKnown RBP10.1□□□□□ -0.79
CLIP1-214ENST00000540539 FAF1Q9UNN5 650 aaPredicted RBP10.1□□□□□ -0.79
CLIP1-214ENST00000540539 MYO5AQ9Y4I1 1855 aaKnown RBP10.1□□□□□ -0.79
CLIP1-214ENST00000540539 WASF2Q9Y6W5 498 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 TLDC2A0PJX2 215 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 GRID2IPA4D2P6 1211 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 ANKRD34BA5PLL1 514 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 BHMG1C9JSJ3 638 aaPredicted RBP10.1□□□□□ -0.79
CLIP1-214ENST00000540539 PSMG1O95456 288 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 EIF2B2P49770 351 aaKnown RBP10.1□□□□□ -0.79
CLIP1-214ENST00000540539 EXOSC10Q01780 885 aaKnown RBP10.1□□□□□ -0.79
CLIP1-214ENST00000540539 DSG1Q02413 1049 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 SPAG1Q07617 926 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 WASHC5Q12768 1159 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 AIMP1Q12904 312 aaKnown RBP10.1□□□□□ -0.79
CLIP1-214ENST00000540539 PPP2R5CQ13362 524 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 ZNF449Q6P9G9 518 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 FASTKD5Q7L8L6 764 aaKnown RBP10.1□□□□□ -0.79
CLIP1-214ENST00000540539 MTMR8Q96EF0 704 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 ANKRD36BP1Q96IX9 119 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 RPAP3Q9H6T3 665 aaPredicted RBP10.1□□□□□ -0.79
CLIP1-214ENST00000540539 METTL14Q9HCE5 456 aaKnown RBP10.1□□□□□ -0.79
CLIP1-214ENST00000540539 LRRC4BQ9NT99 713 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 ZNF212Q9UDV6 495 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 ZBTB1Q9Y2K1 713 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 PCDHA13Q9Y5I0 950 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 SNX9Q9Y5X1 595 aa10.1□□□□□ -0.79
CLIP1-214ENST00000540539 NOTOA8MTQ0 251 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 PGM3O95394 542 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 PLEKP08567 350 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-214ENST00000540539 CASP1P29466 404 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 GFPT1Q06210 699 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-214ENST00000540539 GRM2Q14416 872 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 TXNRD1Q16881 649 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 WDR78Q5VTH9 848 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 INTS5Q6P9B9 1019 aaKnown RBP10.09□□□□□ -0.79
CLIP1-214ENST00000540539 ACAD11Q709F0 780 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 COPS6Q7L5N1 327 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 PHLDB2Q86SQ0 1253 aa10.09□□□□□ -0.79
CLIP1-214ENST00000540539 VPS36Q86VN1 386 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms