RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ASCL5Q7RTU5 278 aa15.15■□□□□ 0.02
SS18-204ENST00000539244 IFNLR1Q8IU57 520 aaPredicted RBP15.15■□□□□ 0.02
SS18-204ENST00000539244 RNF149Q8NC42 400 aa15.15■□□□□ 0.02
SS18-204ENST00000539244 CCDC51Q96ER9 411 aa15.15■□□□□ 0.02
SS18-204ENST00000539244 SLKQ9H2G2 1235 aaPredicted RBP15.15■□□□□ 0.02
SS18-204ENST00000539244 MFSD1Q9H3U5 465 aa15.15■□□□□ 0.02
SS18-204ENST00000539244 ZSWIM4Q9H7M6 989 aa15.15■□□□□ 0.02
SS18-204ENST00000539244 IGSF9Q9P2J2 1179 aa15.15■□□□□ 0.02
SS18-204ENST00000539244 TDRD15B5MCY1 1934 aaKnown RBP15.14■□□□□ 0.01
SS18-204ENST00000539244 PRR23AA6NEV1 266 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 SPDYE4A6NLX3 237 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 CCNT1O60563 726 aaKnown RBP15.14■□□□□ 0.01
SS18-204ENST00000539244 TSPAN1O60635 241 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 CDKL5O76039 1030 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 C1RP00736 705 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 SSBP05455 408 aaKnown RBP eCLIP15.14■□□□□ 0.01
SS18-204ENST00000539244 URODP06132 367 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 ADH1AP07327 375 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 NPR3P17342 541 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 AOC1P19801 751 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 STK3Q13188 491 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 MXD4Q14582 209 aaPredicted RBP15.14■□□□□ 0.01
SS18-204ENST00000539244 KIAA0319Q5VV43 1072 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 NOTUMQ6P988 496 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 MTRQ99707 1265 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 LARP6Q9BRS8 491 aaKnown RBP15.14■□□□□ 0.01
SS18-204ENST00000539244 KCNK12Q9HB15 430 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 RXFP1Q9HBX9 757 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 XPNPEP1Q9NQW7 623 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 MAN1C1Q9NR34 630 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 RGL1Q9NZL6 768 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 DPP7Q9UHL4 492 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 IPPQ9Y573 584 aa15.14■□□□□ 0.01
SS18-204ENST00000539244 MTCL1Q9Y4B5 1905 aaKnown RBP15.13■□□□□ 0.01
SS18-204ENST00000539244 DOCK8Q8NF50 2099 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 ARL5CA6NH57 179 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 TEX28O15482 410 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 N4BP1O75113 896 aaKnown RBP15.13■□□□□ 0.01
SS18-204ENST00000539244 ERLIN2O94905 339 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 ITGA4P13612 1032 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 XBP1P17861 261 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 GLUD2P49448 558 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 SCRN1Q12765 414 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 XKR9Q5GH70 373 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 PIK3AP1Q6ZUJ8 805 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 POTEDQ86YR6 584 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 GPR65Q8IYL9 337 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 SLFN12Q8IYM2 578 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 HDAC7Q8WUI4 952 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 DYDC2Q96IM9 177 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 RTP3Q9BQQ7 232 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 EIF2AQ9BY44 585 aaKnown RBP15.13■□□□□ 0.01
SS18-204ENST00000539244 NFKBIZQ9BYH8 718 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 CSRNP2Q9H175 543 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 WDR6Q9NNW5 1121 aaKnown RBP15.13■□□□□ 0.01
SS18-204ENST00000539244 CHST7Q9NS84 486 aa15.13■□□□□ 0.01
SS18-204ENST00000539244 PRG3Q9Y2Y8 225 aaPredicted RBP15.13■□□□□ 0.01
SS18-204ENST00000539244 ZMYM2Q9UBW7 1377 aa15.12■□□□□ 0.01
SS18-204ENST00000539244 C2CD2LO14523 706 aa15.12■□□□□ 0.01
SS18-204ENST00000539244 ZBTB39O15060 712 aa15.12■□□□□ 0.01
SS18-204ENST00000539244 LYPLA2O95372 231 aa15.12■□□□□ 0.01
SS18-204ENST00000539244 GLUD1P00367 558 aa15.12■□□□□ 0.01
SS18-204ENST00000539244 AK2P54819 239 aa15.12■□□□□ 0.01
SS18-204ENST00000539244 DSG1Q02413 1049 aa15.12■□□□□ 0.01
SS18-204ENST00000539244 ELMSAN1Q6PJG2 1045 aa15.12■□□□□ 0.01
SS18-204ENST00000539244 TAS1R1Q7RTX1 841 aa15.12■□□□□ 0.01
SS18-204ENST00000539244 CCDC105Q8IYK2 499 aa15.12■□□□□ 0.01
SS18-204ENST00000539244 OXER1Q8TDS5 423 aa15.12■□□□□ 0.01
SS18-204ENST00000539244 STAMQ92783 540 aa15.12■□□□□ 0.01
SS18-204ENST00000539244 GAD1Q99259 594 aa15.12■□□□□ 0.01
SS18-204ENST00000539244 RNF39Q9H2S5 420 aa15.12■□□□□ 0.01
SS18-204ENST00000539244 BMP2KQ9NSY1 1161 aaPredicted RBP15.12■□□□□ 0.01
SS18-204ENST00000539244 PDRG1Q9NUG6 133 aa15.12■□□□□ 0.01
SS18-204ENST00000539244 MIOSQ9NXC5 875 aa15.12■□□□□ 0.01
SS18-204ENST00000539244 EPS15L1Q9UBC2 864 aa15.12■□□□□ 0.01
SS18-204ENST00000539244 CCDC195A0A1B0GUA6 201 aa15.11■□□□□ 0.01
SS18-204ENST00000539244 SLITRK3O94933 977 aa15.11■□□□□ 0.01
SS18-204ENST00000539244 MLH1P40692 756 aa15.11■□□□□ 0.01
SS18-204ENST00000539244 OR1G1P47890 313 aa15.11■□□□□ 0.01
SS18-204ENST00000539244 CYP4A11Q02928 519 aa15.11■□□□□ 0.01
SS18-204ENST00000539244 MBTD1Q05BQ5 628 aa15.11■□□□□ 0.01
SS18-204ENST00000539244 TFDP1Q14186 410 aa15.11■□□□□ 0.01
SS18-204ENST00000539244 CTTNQ14247 550 aaKnown RBP15.11■□□□□ 0.01
SS18-204ENST00000539244 AMHR2Q16671 573 aa15.11■□□□□ 0.01
SS18-204ENST00000539244 EARS2Q5JPH6 523 aaKnown RBP15.11■□□□□ 0.01
SS18-204ENST00000539244 NCAPH2Q6IBW4 605 aa15.11■□□□□ 0.01
SS18-204ENST00000539244 FLCNQ8NFG4 579 aa15.11■□□□□ 0.01
SS18-204ENST00000539244 NXPE3Q969Y0 559 aa15.11■□□□□ 0.01
SS18-204ENST00000539244 ZFP42Q96MM3 310 aa15.11■□□□□ 0.01
SS18-204ENST00000539244 HSD17B14Q9BPX1 270 aa15.11■□□□□ 0.01
SS18-204ENST00000539244 GJB4Q9NTQ9 266 aa15.11■□□□□ 0.01
SS18-204ENST00000539244 WNT16Q9UBV4 365 aa15.11■□□□□ 0.01
SS18-204ENST00000539244 GIT1Q9Y2X7 761 aa15.11■□□□□ 0.01
SS18-204ENST00000539244 CLUHO75153 1309 aa15.11■□□□□ 0.01
SS18-204ENST00000539244 INO80B-WBP1J3KQ70 363 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 PI15O43692 258 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 PFKFB2O60825 505 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 NR1I2O75469 434 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 DGAT1O75907 488 aa15.1■□□□□ 0.01
SS18-204ENST00000539244 BAG4O95429 457 aaKnown RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms