RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 DGKKQ5KSL6 1271 aa10.38□□□□□ -0.75
USP28-205ENST00000537706 GLYCTKQ8IVS8 523 aa10.38□□□□□ -0.75
USP28-205ENST00000537706 RRP36Q96EU6 259 aaKnown RBP10.38□□□□□ -0.75
USP28-205ENST00000537706 FAM167AQ96KS9 214 aa10.38□□□□□ -0.75
USP28-205ENST00000537706 MXRA8Q9BRK3 442 aa10.38□□□□□ -0.75
USP28-205ENST00000537706 CNNM2Q9H8M5 875 aa10.38□□□□□ -0.75
USP28-205ENST00000537706 TMEM9BQ9NQ34 198 aa10.38□□□□□ -0.75
USP28-205ENST00000537706 KCNH7Q9NS40 1196 aa10.38□□□□□ -0.75
USP28-205ENST00000537706 ZBTB40Q9NUA8 1239 aa10.38□□□□□ -0.75
USP28-205ENST00000537706 PIN4Q9Y237 131 aaKnown RBP10.38□□□□□ -0.75
USP28-205ENST00000537706 MRPS23Q9Y3D9 190 aaKnown RBP10.38□□□□□ -0.75
USP28-205ENST00000537706 PIAS3Q9Y6X2 628 aa10.38□□□□□ -0.75
USP28-205ENST00000537706 IGKV6D-21A0A0A0MT36 114 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 K7ESF4 209 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 ZNF623O75123 536 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 RHOBTB1O94844 696 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 POU2F2P09086 479 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 FGFR4P22455 802 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 GPC3P51654 580 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 FGD1P98174 961 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 GRM4Q14833 912 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 USP41Q3LFD5 358 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 PABPC1LQ4VXU2 614 aaKnown RBP10.37□□□□□ -0.75
USP28-205ENST00000537706 LILRA6Q6PI73 481 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 EVI5LQ96CN4 794 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 APOL6Q9BWW8 343 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 RSAD1Q9HA92 442 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 MEIS2O14770 477 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 CCL16O15467 120 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 DDHD2O94830 711 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 CHRNB1P11230 501 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 SWSAP1Q6NVH7 229 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 TAS1R1Q7RTX1 841 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 KBTBD6Q86V97 674 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 NPAS3Q8IXF0 933 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 ZNF687Q8N1G0 1237 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 ITFG1Q8TB96 612 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 PIBF1Q8WXW3 757 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 MBOAT7Q96N66 472 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 SMOC1Q9H4F8 434 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 PSTPIP2Q9H939 334 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 ZFP14Q9HCL3 533 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 UBN1Q9NPG3 1134 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 TRPV5Q9NQA5 729 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 ZSWIM5Q9P217 1185 aa10.37□□□□□ -0.75
USP28-205ENST00000537706 MYH15Q9Y2K3 1946 aa10.36□□□□□ -0.75
USP28-205ENST00000537706 WDR87Q6ZQQ6 2873 aa10.36□□□□□ -0.75
USP28-205ENST00000537706 CCDC163A0A0D9SF12 145 aa10.36□□□□□ -0.75
USP28-205ENST00000537706 CAVIN2O95810 425 aa10.36□□□□□ -0.75
USP28-205ENST00000537706 C8AP07357 584 aa10.36□□□□□ -0.75
USP28-205ENST00000537706 ABHD15Q6UXT9 468 aa10.36□□□□□ -0.75
USP28-205ENST00000537706 TICAM2Q86XR7 235 aa10.36□□□□□ -0.75
USP28-205ENST00000537706 LURAP1LQ8IV03 231 aa10.36□□□□□ -0.75
USP28-205ENST00000537706 CSGALNACT1Q8TDX6 532 aa10.36□□□□□ -0.75
USP28-205ENST00000537706 MCRS1Q96EZ8 462 aa10.36□□□□□ -0.75
USP28-205ENST00000537706 UBL7Q96S82 380 aaPredicted RBP10.36□□□□□ -0.75
USP28-205ENST00000537706 FBXW11Q9UKB1 542 aa10.36□□□□□ -0.75
USP28-205ENST00000537706 KLK13Q9UKR3 277 aa10.36□□□□□ -0.75
USP28-205ENST00000537706 ZFYVE26Q68DK2 2539 aa10.36□□□□□ -0.75
USP28-205ENST00000537706 COL4A3Q01955 1670 aa10.36□□□□□ -0.75
USP28-205ENST00000537706 RALGAPA1Q6GYQ0 2036 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 ERICH2A1L162 156 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 ZBTB42B2RXF5 422 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 TK2O00142 265 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 DDX39AO00148 427 aaKnown RBP10.35□□□□□ -0.75
USP28-205ENST00000537706 CATSPER4Q7RTX7 472 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 ZNF605Q86T29 641 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 CCDC60Q8IWA6 550 aaPredicted RBP10.35□□□□□ -0.75
USP28-205ENST00000537706 DEFB124Q8NES8 71 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 PI4K2BQ8TCG2 481 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 ING5Q8WYH8 240 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 ZNF668Q96K58 619 aaPredicted RBP10.35□□□□□ -0.75
USP28-205ENST00000537706 C8orf33Q9H7E9 229 aaPredicted RBP10.35□□□□□ -0.75
USP28-205ENST00000537706 NRBP2Q9NSY0 501 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 ZBTB47Q9UFB7 747 aaPredicted RBP10.35□□□□□ -0.75
USP28-205ENST00000537706 PCDHA6Q9UN73 950 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 PCDHA8Q9Y5H6 950 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 ZNF263O14978 683 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 KHNYNO15037 678 aaKnown RBP10.35□□□□□ -0.75
USP28-205ENST00000537706 POMCP01189 267 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 CCNE1P24864 410 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 DNM2P50570 870 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 MLLT6P55198 1093 aaPredicted RBP10.35□□□□□ -0.75
USP28-205ENST00000537706 GRM2Q14416 872 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 KARSQ15046 597 aaKnown RBP10.35□□□□□ -0.75
USP28-205ENST00000537706 IMMTQ16891 758 aaKnown RBP10.35□□□□□ -0.75
USP28-205ENST00000537706 UVSSAQ2YD98 709 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 UAP1L1Q3KQV9 507 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 RTL10Q7L3V2 364 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 TRMT1LQ7Z2T5 733 aaKnown RBP10.35□□□□□ -0.75
USP28-205ENST00000537706 RNF168Q8IYW5 571 aaPredicted RBP10.35□□□□□ -0.75
USP28-205ENST00000537706 SYNPOQ8N3V7 929 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 LRRC71Q8N4P6 559 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 CNNM3Q8NE01 707 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 DEPDC1BQ8WUY9 529 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 HNRNPLLQ8WVV9 542 aaKnown RBP10.35□□□□□ -0.75
USP28-205ENST00000537706 LRIG1Q96JA1 1093 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 ZC3H10Q96K80 434 aaKnown RBP10.35□□□□□ -0.75
USP28-205ENST00000537706 PLA2G2FQ9BZM2 168 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 CCDC86Q9H6F5 360 aaKnown RBP10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms