RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 SMOC2Q9H3U7 446 aa9.42□□□□□ -0.9
USP28-203ENST00000537490 TTC12Q9H892 705 aaPredicted RBP9.42□□□□□ -0.9
USP28-203ENST00000537490 BRMS1Q9HCU9 246 aa9.42□□□□□ -0.9
USP28-203ENST00000537490 ANKEF1Q9NU02 776 aa9.42□□□□□ -0.9
USP28-203ENST00000537490 DZANK1Q9NVP4 752 aa9.42□□□□□ -0.9
USP28-203ENST00000537490 MARCH5Q9NX47 278 aa9.42□□□□□ -0.9
USP28-203ENST00000537490 KANSL3Q9P2N6 904 aa9.42□□□□□ -0.9
USP28-203ENST00000537490 NR2E1Q9Y466 385 aa9.42□□□□□ -0.9
USP28-203ENST00000537490 HES2Q9Y543 173 aa9.42□□□□□ -0.9
USP28-203ENST00000537490 PIEZO1Q92508 2521 aa9.42□□□□□ -0.9
USP28-203ENST00000537490 INO80B-WBP1J3KQ70 363 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 DGAT1O75907 488 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 BRD1O95696 1058 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 NEFLP07196 543 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 ASGR2P07307 311 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 GLRA2P23416 452 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 KLRC2P26717 231 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 AVPR2P30518 371 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 AXLP30530 894 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 RARRES1P49788 294 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 CLCN4P51793 760 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 NEK4P51957 841 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 MBTD1Q05BQ5 628 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 POU5F1BQ06416 359 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 TCF15Q12870 199 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 CAPSQ13938 189 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 MXD4Q14582 209 aaPredicted RBP9.41□□□□□ -0.9
USP28-203ENST00000537490 CABP7Q86V35 215 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 PPFIBP1Q86W92 1011 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 CDR2LQ86X02 465 aaPredicted RBP9.41□□□□□ -0.9
USP28-203ENST00000537490 COLGALT2Q8IYK4 626 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 PIGOQ8TEQ8 1089 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 EMILIN2Q9BXX0 1053 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 CSRNP2Q9H175 543 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 TMEM60Q9H2L4 133 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 UBN1Q9NPG3 1134 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 PPP4R2Q9NY27 417 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 LIMD1Q9UGP4 676 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 DBR1Q9UK59 544 aaKnown RBP9.41□□□□□ -0.9
USP28-203ENST00000537490 SORCS3Q9UPU3 1222 aa9.41□□□□□ -0.9
USP28-203ENST00000537490 PRG3Q9Y2Y8 225 aaPredicted RBP9.41□□□□□ -0.9
USP28-203ENST00000537490 ZDBF2Q9HCK1 2354 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 ARL5CA6NH57 179 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 POTEMA6NI47 508 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 F8W810 466 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 C2CD2LO14523 706 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 INPPL1O15357 1258 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 B4GALT5O43286 388 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 NEMFO60524 1076 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 SEC24BO95487 1268 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 EFEMP2O95967 443 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 SOD2P04179 222 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 SPATA31C1P0DKV0 1188 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 ARF4P18085 180 aaPredicted RBP9.4□□□□□ -0.9
USP28-203ENST00000537490 ATP2B1P20020 1258 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 MLH1P40692 756 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 OR1G1P47890 313 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 SCNN1GP51170 649 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 PTPN5P54829 565 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 GUCY1B3Q02153 619 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 DSC1Q08554 894 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 TFDP1Q14186 410 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 PCBP1Q15365 356 aaKnown RBP eCLIP9.4□□□□□ -0.9
USP28-203ENST00000537490 NOTUMQ6P988 496 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 MAEAQ7L5Y9 396 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 GPR149Q86SP6 731 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 RNF168Q8IYW5 571 aaPredicted RBP9.4□□□□□ -0.9
USP28-203ENST00000537490 ZDHHC14Q8IZN3 488 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 CCDC51Q96ER9 411 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 ZFP42Q96MM3 310 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 HERC2P3Q9BVR0 1158 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 APOL6Q9BWW8 343 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 GPRC5CQ9NQ84 441 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 MRPL17Q9NRX2 175 aaKnown RBP9.4□□□□□ -0.9
USP28-203ENST00000537490 USTQ9Y2C2 406 aa9.4□□□□□ -0.9
USP28-203ENST00000537490 TEX28O15482 410 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 USO1O60763 962 aaKnown RBP9.39□□□□□ -0.91
USP28-203ENST00000537490 MED24O75448 989 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 NPTXRO95502 500 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 URODP06132 367 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 MYBP10242 640 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 XRCC6P12956 609 aaKnown RBP eCLIP9.39□□□□□ -0.91
USP28-203ENST00000537490 AKAP5P24588 427 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 MCM7P33993 719 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 NCBP1Q09161 790 aaKnown RBP9.39□□□□□ -0.91
USP28-203ENST00000537490 MTMR3Q13615 1198 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 TRIM29Q14134 588 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 KIAA0319Q5VV43 1072 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 CATSPER3Q86XQ3 398 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 UBALD2Q8IYN6 164 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 PLCD3Q8N3E9 789 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 TDRD5Q8NAT2 981 aaKnown RBP9.39□□□□□ -0.91
USP28-203ENST00000537490 GSTCDQ8NEC7 633 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 RABGGTAQ92696 567 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 RPS6KC1Q96S38 1066 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 PRRX2Q99811 253 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 NFKBIZQ9BYH8 718 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 POLR3FQ9H1D9 316 aaPredicted RBP9.39□□□□□ -0.91
USP28-203ENST00000537490 NXF3Q9H4D5 531 aaKnown RBP9.39□□□□□ -0.91
USP28-203ENST00000537490 SFXN1Q9H9B4 322 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms