RNA–Protein interactions for RNA: ENST00000533149.1

TRAPPC4-213, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 1,340 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-213ENST00000533149 INPPL1O15357 1258 aa12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 LRRN2O75325 713 aa12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 BAG4O95429 457 aaKnown RBP12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 ADH1AP07327 375 aa12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 SKIP12755 728 aa12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 XBP1P17861 261 aa12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 PRKCQQ04759 706 aa12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 RNASELQ05823 741 aaKnown RBP12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 HTR4Q13639 388 aa12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 MIS18BP1Q6P0N0 1132 aa12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 ABHD15Q6UXT9 468 aa12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 BCL7CQ8WUZ0 217 aaPredicted RBP12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 SMG7Q92540 1137 aaKnown RBP12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 DDX23Q9BUQ8 820 aaKnown RBP12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 ADAMTS10Q9H324 1103 aa12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 ZSCAN16Q9H4T2 348 aaPredicted RBP12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 NRDE2Q9H7Z3 1164 aa12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 PIDD1Q9HB75 910 aa12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 AGO4Q9HCK5 861 aaKnown RBP12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 CHST12Q9NRB3 414 aa12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 TBC1D13Q9NVG8 400 aa12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 VPS54Q9P1Q0 977 aa12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 RAB23Q9ULC3 237 aa12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 AKT3Q9Y243 479 aa12.65□□□□□ -0.38
TRAPPC4-213ENST00000533149 CFAP47Q6ZTR5 3102 aa12.65□□□□□ -0.39
TRAPPC4-213ENST00000533149 LILRB3O75022 631 aa12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 SSBP05455 408 aaKnown RBP eCLIP12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 ITGB3BPQ13352 177 aaPredicted RBP12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 SNW1Q13573 536 aaKnown RBP12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 UBXN2BQ14CS0 331 aa12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 SAFBQ15424 915 aaKnown RBP eCLIP12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 UBE2SQ16763 222 aa12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 CEP55Q53EZ4 464 aa12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 NOMO2Q5JPE7 1267 aa12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 RSPO2Q6UXX9 243 aaPredicted RBP12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 HEATR3Q7Z4Q2 680 aa12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 CCDC60Q8IWA6 550 aaPredicted RBP12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 HDAC7Q8WUI4 952 aa12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 GBP4Q96PP9 640 aa12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 TRAIPQ9BWF2 469 aa12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 VN1R3Q9BXE9 311 aa12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 PARD6AQ9NPB6 346 aa12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 SH3GLB2Q9NR46 395 aa12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 ATP6V1DQ9Y5K8 247 aa12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 NUMBLQ9Y6R0 609 aa12.64□□□□□ -0.39
TRAPPC4-213ENST00000533149 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 FAM170BA6NMN3 283 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 NCAM2O15394 837 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 LRP3O75074 770 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 PAPLNO95428 1278 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 CCNE2O96020 404 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 GLUD1P00367 558 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 URODP06132 367 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 DARSP14868 501 aaKnown RBP12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 MCM4P33991 863 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 PHKA2P46019 1235 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 CLCN3P51790 818 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 NLRP5P59047 1200 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 GPC5P78333 572 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 NFKBIBQ15653 356 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 MLF2Q15773 248 aaPredicted RBP12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 WWC2Q6AWC2 1192 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 SWSAP1Q6NVH7 229 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 EFCAB12Q6NXP0 572 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 FAM173BQ6P4H8 233 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 SCLT1Q96NL6 688 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 NELL2Q99435 816 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 PHF20Q9BVI0 1012 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 BARHL2Q9NY43 387 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 FRYLO94915 3013 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 EVPLQ92817 2033 aa12.63□□□□□ -0.39
TRAPPC4-213ENST00000533149 BTBD18B2RXH4 712 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 DDX39AO00148 427 aaKnown RBP12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 FOXD2O60548 495 aaPredicted RBP12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 C1RP00736 705 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 ALDH2P05091 517 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 SLC11A1P49279 550 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 NRLP54845 237 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 SHC2P98077 582 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 PFKPQ01813 784 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 SPEM2Q0P670 501 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 SLC44A4Q53GD3 710 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 ZBTB41Q5SVQ8 909 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 LAIR1Q6GTX8 287 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 GET4Q7L5D6 327 aaPredicted RBP12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 DIS3L2Q8IYB7 885 aaKnown RBP12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 RPS6KC1Q96S38 1066 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 GBP3Q9H0R5 595 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 PLEKHA4Q9H4M7 779 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 ZDHHC7Q9NXF8 308 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 DNAJB4Q9UDY4 337 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 INPP5FQ9Y2H2 1132 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 MAFBQ9Y5Q3 323 aaPredicted RBP12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 CHD6Q8TD26 2715 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 MIA3Q5JRA6 1907 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 USP24Q9UPU5 2620 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 MEIS1O00470 390 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 C2CD2LO14523 706 aa12.62□□□□□ -0.39
TRAPPC4-213ENST00000533149 RFPL2O75678 378 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms