RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 D2HGDHQ8N465 521 aa5.47□□□□□ -1.53
CD44-235ENST00000532339 KIAA1958Q8N8K9 716 aa5.47□□□□□ -1.53
CD44-235ENST00000532339 SLC7A6OSQ96CW6 309 aaPredicted RBP5.47□□□□□ -1.53
CD44-235ENST00000532339 MRIQ9BWK5 157 aa5.47□□□□□ -1.53
CD44-235ENST00000532339 MTFR1LQ9H019 292 aa5.47□□□□□ -1.53
CD44-235ENST00000532339 AURKAIP1Q9NWT8 199 aaPredicted RBP5.47□□□□□ -1.53
CD44-235ENST00000532339 B4GALT6Q9UBX8 382 aa5.47□□□□□ -1.53
CD44-235ENST00000532339 DENND2AQ9ULE3 1009 aa5.47□□□□□ -1.53
CD44-235ENST00000532339 CDC42BPAQ5VT25 1732 aa5.47□□□□□ -1.53
CD44-235ENST00000532339 NEXMIFQ5QGS0 1516 aa5.47□□□□□ -1.53
CD44-235ENST00000532339 ARHGAP31Q2M1Z3 1444 aa5.47□□□□□ -1.53
CD44-235ENST00000532339 CROCC2H7BZ55 1655 aa5.47□□□□□ -1.53
CD44-235ENST00000532339 NPIPB8E9PQR5 432 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 CYP27B1O15528 508 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 RFPL3O75679 317 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 ADCY7P51828 1080 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 ATP2C1P98194 919 aaPredicted RBP5.46□□□□□ -1.54
CD44-235ENST00000532339 PTH1RQ03431 593 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 ADCY1Q08828 1119 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 RIN1Q13671 783 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 EPHA7Q15375 998 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 SYNPOQ8N3V7 929 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 RPGRQ92834 1020 aaKnown RBP5.46□□□□□ -1.54
CD44-235ENST00000532339 GCDHQ92947 438 aaPredicted RBP5.46□□□□□ -1.54
CD44-235ENST00000532339 TMEM176AQ96HP8 235 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 C16orf92Q96LL3 132 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 TUBGCP5Q96RT8 1024 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 MPHOSPH9Q99550 1183 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 PCED1AQ9H1Q7 454 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 SLC6A15Q9H2J7 730 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 AGO3Q9H9G7 860 aaKnown RBP5.46□□□□□ -1.54
CD44-235ENST00000532339 TMEM260Q9NX78 707 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 KCMF1Q9P0J7 381 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 TRPM2O94759 1503 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 NOS1P29475 1434 aa5.46□□□□□ -1.54
CD44-235ENST00000532339 C1orf167Q5SNV9 1468 aa5.45□□□□□ -1.54
CD44-235ENST00000532339 A0A1W2PRX2 142 aa5.45□□□□□ -1.54
CD44-235ENST00000532339 CBX4O00257 560 aa5.45□□□□□ -1.54
CD44-235ENST00000532339 PPP1R12AO14974 1030 aaPredicted RBP5.45□□□□□ -1.54
CD44-235ENST00000532339 PLSCR1O15162 318 aa5.45□□□□□ -1.54
CD44-235ENST00000532339 MAFGO15525 162 aa5.45□□□□□ -1.54
CD44-235ENST00000532339 ASMTLO95671 621 aa5.45□□□□□ -1.54
CD44-235ENST00000532339 JMJD7P0C870 316 aa5.45□□□□□ -1.54
CD44-235ENST00000532339 SDSP20132 328 aa5.45□□□□□ -1.54
CD44-235ENST00000532339 BCAR1P56945 870 aa5.45□□□□□ -1.54
CD44-235ENST00000532339 IDI1Q13907 227 aa5.45□□□□□ -1.54
CD44-235ENST00000532339 CFAP100Q494V2 611 aa5.45□□□□□ -1.54
CD44-235ENST00000532339 PRAMEF9Q5VWM5 478 aa5.45□□□□□ -1.54
CD44-235ENST00000532339 CDCA2Q69YH5 1023 aaPredicted RBP5.45□□□□□ -1.54
CD44-235ENST00000532339 INTS7Q9NVH2 962 aaKnown RBP5.45□□□□□ -1.54
CD44-235ENST00000532339 MAGEC2Q9UBF1 373 aaPredicted RBP5.45□□□□□ -1.54
CD44-235ENST00000532339 CFDP1Q9UEE9 299 aaPredicted RBP5.45□□□□□ -1.54
CD44-235ENST00000532339 MAGEL2Q9UJ55 1249 aa5.45□□□□□ -1.54
CD44-235ENST00000532339 GIT1Q9Y2X7 761 aa5.45□□□□□ -1.54
CD44-235ENST00000532339 RBM8AQ9Y5S9 174 aaKnown RBP5.45□□□□□ -1.54
CD44-235ENST00000532339 ADGRL3Q9HAR2 1447 aa5.45□□□□□ -1.54
CD44-235ENST00000532339 FYCO1Q9BQS8 1478 aa5.45□□□□□ -1.54
CD44-235ENST00000532339 MTUS2Q5JR59 1369 aa5.44□□□□□ -1.54
CD44-235ENST00000532339 CAPN14A8MX76 684 aa5.44□□□□□ -1.54
CD44-235ENST00000532339 SUV39H1O43463 412 aa5.44□□□□□ -1.54
CD44-235ENST00000532339 ZNF202O95125 648 aa5.44□□□□□ -1.54
CD44-235ENST00000532339 ANTXR2P58335 489 aa5.44□□□□□ -1.54
CD44-235ENST00000532339 ABHD18Q0P651 414 aa5.44□□□□□ -1.54
CD44-235ENST00000532339 PABPC4Q13310 644 aaKnown RBP eCLIP5.44□□□□□ -1.54
CD44-235ENST00000532339 LSM12Q3MHD2 195 aaKnown RBP5.44□□□□□ -1.54
CD44-235ENST00000532339 BMP8AQ7Z5Y6 402 aa5.44□□□□□ -1.54
CD44-235ENST00000532339 ANKRD35Q8N283 1001 aa5.44□□□□□ -1.54
CD44-235ENST00000532339 IL17DQ8TAD2 202 aa5.44□□□□□ -1.54
CD44-235ENST00000532339 NKD2Q969F2 451 aaPredicted RBP5.44□□□□□ -1.54
CD44-235ENST00000532339 ABHD8Q96I13 439 aa5.44□□□□□ -1.54
CD44-235ENST00000532339 DYDC2Q96IM9 177 aa5.44□□□□□ -1.54
CD44-235ENST00000532339 PLEKHG4BQ96PX9 1271 aa5.44□□□□□ -1.54
CD44-235ENST00000532339 KANSL2Q9H9L4 492 aa5.44□□□□□ -1.54
CD44-235ENST00000532339 POLR3BQ9NW08 1133 aaPredicted RBP5.44□□□□□ -1.54
CD44-235ENST00000532339 EHBP1L1Q8N3D4 1523 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 NWD2Q9ULI1 1742 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 ZFYVE9O95405 1425 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 ADAMTS13Q76LX8 1427 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 C2orf78A6NCI8 922 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 GOLGA8BA8MQT2 603 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 SLC9A1P19634 815 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 PTX3P26022 381 aaPredicted RBP5.43□□□□□ -1.54
CD44-235ENST00000532339 STAT3P40763 770 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 BPIFB4P59827 614 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 KLF10Q13118 480 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 TCIRG1Q13488 830 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 SAFB2Q14151 953 aaKnown RBP eCLIP5.43□□□□□ -1.54
CD44-235ENST00000532339 TIGD7Q6NT04 549 aaPredicted RBP5.43□□□□□ -1.54
CD44-235ENST00000532339 PHYKPLQ8IUZ5 450 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 ZZZ3Q8IYH5 903 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 ANKRD53Q8N9V6 530 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 WDR92Q96MX6 357 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 ORAI2Q96SN7 254 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 ELF4Q99607 663 aaPredicted RBP5.43□□□□□ -1.54
CD44-235ENST00000532339 ORAI3Q9BRQ5 295 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 SYNPO2Q9UMS6 1093 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 ZKSCAN5Q9Y2L8 839 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 SPO11Q9Y5K1 396 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 PDE4DIPQ5VU43 2346 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 MBD5Q9P267 1494 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms