RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 MLLT1Q03111 559 aaPredicted RBP23.13■■□□□ 1.29
VPS28-212ENST00000530836 POU5F1BQ06416 359 aa23.13■■□□□ 1.29
VPS28-212ENST00000530836 RBL2Q08999 1139 aa23.13■■□□□ 1.29
VPS28-212ENST00000530836 CAPSQ13938 189 aa23.13■■□□□ 1.29
VPS28-212ENST00000530836 ARID5BQ14865 1188 aa23.13■■□□□ 1.29
VPS28-212ENST00000530836 PTPN21Q16825 1174 aa23.13■■□□□ 1.29
VPS28-212ENST00000530836 EFCAB12Q6NXP0 572 aa23.13■■□□□ 1.29
VPS28-212ENST00000530836 INTS8Q75QN2 995 aaKnown RBP23.13■■□□□ 1.29
VPS28-212ENST00000530836 TC2NQ8N9U0 490 aa23.13■■□□□ 1.29
VPS28-212ENST00000530836 HSPBP1Q9NZL4 362 aa23.13■■□□□ 1.29
VPS28-212ENST00000530836 SUCLA2Q9P2R7 463 aaPredicted RBP23.13■■□□□ 1.29
VPS28-212ENST00000530836 GTF2IRD1Q9UHL9 959 aa23.13■■□□□ 1.29
VPS28-212ENST00000530836 HNRNPDLO14979 420 aaKnown RBP23.12■■□□□ 1.29
VPS28-212ENST00000530836 EVI5O60447 810 aa23.12■■□□□ 1.29
VPS28-212ENST00000530836 MFAP3LO75121 409 aa23.12■■□□□ 1.29
VPS28-212ENST00000530836 CD4P01730 458 aa23.12■■□□□ 1.29
VPS28-212ENST00000530836 AFPP02771 609 aaKnown RBP23.12■■□□□ 1.29
VPS28-212ENST00000530836 CASP4P49662 377 aa23.12■■□□□ 1.29
VPS28-212ENST00000530836 LAMTOR4Q0VGL1 99 aa23.12■■□□□ 1.29
VPS28-212ENST00000530836 KCNH2Q12809 1159 aa23.12■■□□□ 1.29
VPS28-212ENST00000530836 LRMPQ12912 555 aa23.12■■□□□ 1.29
VPS28-212ENST00000530836 CDCA2Q69YH5 1023 aaPredicted RBP23.12■■□□□ 1.29
VPS28-212ENST00000530836 ZBTB8OSQ8IWT0 167 aa23.12■■□□□ 1.29
VPS28-212ENST00000530836 PCMTD1Q96MG8 357 aaPredicted RBP23.12■■□□□ 1.29
VPS28-212ENST00000530836 NAA15Q9BXJ9 866 aaKnown RBP23.12■■□□□ 1.29
VPS28-212ENST00000530836 TRPV6Q9H1D0 765 aa23.12■■□□□ 1.29
VPS28-212ENST00000530836 TMX1Q9H3N1 280 aa23.12■■□□□ 1.29
VPS28-212ENST00000530836 A0A1W2PQJ5 194 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 KRT13P13646 458 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 TRIM21P19474 475 aaKnown RBP23.11■■□□□ 1.29
VPS28-212ENST00000530836 KLRC1P26715 233 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 HOXC8P31273 242 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 KCNJ6P48051 423 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 CCZ1BP86790 482 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 CCZ1P86791 482 aaPredicted RBP23.11■■□□□ 1.29
VPS28-212ENST00000530836 PPFIA1Q13136 1202 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 MKRN4PQ13434 485 aaPredicted RBP23.11■■□□□ 1.29
VPS28-212ENST00000530836 SLFN12LQ6IEE8 588 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 BICD1Q96G01 975 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 IKZF4Q9H2S9 585 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 TRMT13Q9NUP7 481 aaKnown RBP23.11■■□□□ 1.29
VPS28-212ENST00000530836 CAPN11Q9UMQ6 739 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 TLR3O15455 904 aaKnown RBP23.11■■□□□ 1.29
VPS28-212ENST00000530836 B4GALT4O60513 344 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 CASP14P31944 242 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 ENPEPQ07075 957 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 FAAP100Q0VG06 881 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 GDF6Q6KF10 455 aaPredicted RBP23.11■■□□□ 1.29
VPS28-212ENST00000530836 TAS1R3Q7RTX0 852 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 METTL13Q8N6R0 699 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 ZNF397Q8NF99 534 aaPredicted RBP23.11■■□□□ 1.29
VPS28-212ENST00000530836 KIAA1524Q8TCG1 905 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 CBWD1Q9BRT8 395 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 NFKBIZQ9BYH8 718 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 EDEM3Q9BZQ6 932 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 KIAA1586Q9HCI6 787 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 SIK3Q9Y2K2 1263 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 LUC7L2Q9Y383 392 aaKnown RBP23.11■■□□□ 1.29
VPS28-212ENST00000530836 STYXL1Q9Y6J8 313 aa23.11■■□□□ 1.29
VPS28-212ENST00000530836 NRCAMQ92823 1304 aa23.1■■□□□ 1.29
VPS28-212ENST00000530836 C17orf102A2RUQ5 167 aa23.1■■□□□ 1.29
VPS28-212ENST00000530836 GTPBP10A4D1E9 387 aaKnown RBP23.1■■□□□ 1.29
VPS28-212ENST00000530836 ZNF500O60304 480 aaPredicted RBP23.1■■□□□ 1.29
VPS28-212ENST00000530836 STX10O60499 249 aa23.1■■□□□ 1.29
VPS28-212ENST00000530836 LIG4P49917 911 aa23.1■■□□□ 1.29
VPS28-212ENST00000530836 ADKP55263 362 aaKnown RBP23.1■■□□□ 1.29
VPS28-212ENST00000530836 MCCD1P59942 119 aaPredicted RBP23.1■■□□□ 1.29
VPS28-212ENST00000530836 HIC1Q14526 733 aa23.1■■□□□ 1.29
VPS28-212ENST00000530836 GRIK4Q16099 956 aa23.1■■□□□ 1.29
VPS28-212ENST00000530836 MTHFD1LQ6UB35 978 aa23.1■■□□□ 1.29
VPS28-212ENST00000530836 C7orf61Q8IZ16 206 aa23.1■■□□□ 1.29
VPS28-212ENST00000530836 LRRC71Q8N4P6 559 aa23.1■■□□□ 1.29
VPS28-212ENST00000530836 LINC01465Q8N7H1 131 aa23.1■■□□□ 1.29
VPS28-212ENST00000530836 TRAPPC12Q8WVT3 735 aa23.1■■□□□ 1.29
VPS28-212ENST00000530836 SLC35C1Q96A29 364 aa23.1■■□□□ 1.29
VPS28-212ENST00000530836 SETD4Q9NVD3 440 aa23.1■■□□□ 1.29
VPS28-212ENST00000530836 CLTBP09497 229 aa23.09■■□□□ 1.29
VPS28-212ENST00000530836 GNAT1P11488 350 aa23.09■■□□□ 1.29
VPS28-212ENST00000530836 IGBP1P78318 339 aa23.09■■□□□ 1.29
VPS28-212ENST00000530836 BFSP1Q12934 665 aa23.09■■□□□ 1.29
VPS28-212ENST00000530836 DRP2Q13474 957 aa23.09■■□□□ 1.29
VPS28-212ENST00000530836 PTGISQ16647 500 aa23.09■■□□□ 1.29
VPS28-212ENST00000530836 TSR1Q2NL82 804 aaKnown RBP23.09■■□□□ 1.29
VPS28-212ENST00000530836 DCAF17Q5H9S7 520 aaPredicted RBP23.09■■□□□ 1.29
VPS28-212ENST00000530836 TCERG1LQ5VWI1 586 aa23.09■■□□□ 1.29
VPS28-212ENST00000530836 ZPBP2Q6X784 338 aa23.09■■□□□ 1.29
VPS28-212ENST00000530836 USP37Q86T82 979 aa23.09■■□□□ 1.29
VPS28-212ENST00000530836 RHPN2Q8IUC4 686 aa23.09■■□□□ 1.29
VPS28-212ENST00000530836 RNF149Q8NC42 400 aa23.09■■□□□ 1.29
VPS28-212ENST00000530836 POMGNT1Q8WZA1 660 aa23.09■■□□□ 1.29
VPS28-212ENST00000530836 BAG1Q99933 345 aaPredicted RBP23.09■■□□□ 1.29
VPS28-212ENST00000530836 ANKRD63C9JTQ0 380 aa23.08■■□□□ 1.29
VPS28-212ENST00000530836 ADSSP30520 456 aa23.08■■□□□ 1.29
VPS28-212ENST00000530836 ADAM17P78536 824 aa23.08■■□□□ 1.29
VPS28-212ENST00000530836 ZNF200P98182 395 aaPredicted RBP23.08■■□□□ 1.29
VPS28-212ENST00000530836 CDC42EP1Q00587 391 aa23.08■■□□□ 1.29
VPS28-212ENST00000530836 CPLX3Q8WVH0 158 aa23.08■■□□□ 1.29
VPS28-212ENST00000530836 TTYH3Q9C0H2 523 aa23.08■■□□□ 1.29
VPS28-212ENST00000530836 PCIF1Q9H4Z3 704 aa23.08■■□□□ 1.29
VPS28-212ENST00000530836 KRT9P35527 623 aa23.08■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms