RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ASPSCR1Q9BZE9 553 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 ZSCAN16Q9H4T2 348 aaPredicted RBP4.72□□□□□ -1.65
CD44-226ENST00000527889 VAT1LQ9HCJ6 419 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 CABP5Q9NP86 173 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 SUCOQ9UBS9 1254 aaKnown RBP4.72□□□□□ -1.65
CD44-226ENST00000527889 TJP2Q9UDY2 1190 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 PGAP2Q9UHJ9 254 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 HERC5Q9UII4 1024 aaKnown RBP4.72□□□□□ -1.65
CD44-226ENST00000527889 PNMA2Q9UL42 364 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 FZD1Q9UP38 647 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 HIF3AQ9Y2N7 669 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 MYH10P35580 1976 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 MKI67P46013 3256 aaKnown RBP4.71□□□□□ -1.66
CD44-226ENST00000527889 A0A1W2PRG0 241 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 KRBA1A5PL33 1030 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 C9IYK1 514 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 FAM229AH3BQW9 127 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 DNAJC8O75937 253 aaPredicted RBP4.71□□□□□ -1.66
CD44-226ENST00000527889 TP53P04637 393 aaPredicted RBP4.71□□□□□ -1.66
CD44-226ENST00000527889 EPHX1P07099 455 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 FGFR1P11362 822 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 TAL1P17542 331 aaPredicted RBP4.71□□□□□ -1.66
CD44-226ENST00000527889 SLC16A2P36021 539 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 ECE1P42892 770 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 GNAQP50148 359 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 MMP14P50281 582 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 AFF1P51825 1210 aaKnown RBP4.71□□□□□ -1.66
CD44-226ENST00000527889 YARSP54577 528 aaKnown RBP4.71□□□□□ -1.66
CD44-226ENST00000527889 SNAP25P60880 206 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 SUMO1P63165 101 aaKnown RBP4.71□□□□□ -1.66
CD44-226ENST00000527889 ZNF543Q08ER8 600 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 TNFAIP1Q13829 316 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 MAP7Q14244 749 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 SAFBQ15424 915 aaKnown RBP eCLIP4.71□□□□□ -1.66
CD44-226ENST00000527889 PFKFB3Q16875 520 aaPredicted RBP4.71□□□□□ -1.66
CD44-226ENST00000527889 KLHL40Q2TBA0 621 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 SKOR2Q2VWA4 1001 aaPredicted RBP4.71□□□□□ -1.66
CD44-226ENST00000527889 ASPRV1Q53RT3 343 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 TRIM61Q5EBN2 209 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 EARS2Q5JPH6 523 aaKnown RBP4.71□□□□□ -1.66
CD44-226ENST00000527889 PPM1JQ5JR12 505 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 KIAA1755Q5JYT7 1200 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 ZBTB37Q5TC79 503 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 SLFN13Q68D06 897 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 WWC2Q6AWC2 1192 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 CAVIN1Q6NZI2 390 aaKnown RBP4.71□□□□□ -1.66
CD44-226ENST00000527889 DLK2Q6UY11 383 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 HEATR3Q7Z4Q2 680 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 BRAPQ7Z569 592 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 ZNF227Q86WZ6 799 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 DIS3L2Q8IYB7 885 aaKnown RBP4.71□□□□□ -1.66
CD44-226ENST00000527889 TMEM151AQ8N4L1 468 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 ACER1Q8TDN7 264 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 KLHDC7BQ96G42 594 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 PGBD1Q96JS3 809 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 ZNF396Q96N95 335 aaPredicted RBP4.71□□□□□ -1.66
CD44-226ENST00000527889 PIGSQ96S52 555 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 NUP88Q99567 741 aaPredicted RBP4.71□□□□□ -1.66
CD44-226ENST00000527889 SPOCK3Q9BQ16 436 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 LZTS2Q9BRK4 669 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 PHF20Q9BVI0 1012 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 SPZ1Q9BXG8 430 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 KLHL25Q9H0H3 589 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 DEFB129Q9H1M3 183 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 TRIM39Q9HCM9 518 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 JPH1Q9HDC5 661 aaPredicted RBP4.71□□□□□ -1.66
CD44-226ENST00000527889 FAM86C1Q9NVL1 165 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 GGA3Q9NZ52 723 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 NYAP2Q9P242 653 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 APEX2Q9UBZ4 518 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 ZBTB21Q9ULJ3 1066 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 CLIC4Q9Y696 253 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 CASP8AP2Q9UKL3 1982 aa4.71□□□□□ -1.66
CD44-226ENST00000527889 ZSWIM8A7E2V4 1837 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 LOC100289279A0A1B0GTE1 492 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 ADM5C9JUS6 153 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 STXBP3O00186 592 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 FANCGO15287 622 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 CBFA2T2O43439 604 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 AOC2O75106 756 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 KATNA1O75449 491 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 DLGAP3O95886 979 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 MBD3O95983 291 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 NDUFB10O96000 172 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 C6orf222P0C671 652 aaPredicted RBP4.7□□□□□ -1.66
CD44-226ENST00000527889 SNHG28P0DPA3 235 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 PABPC1P11940 636 aaKnown RBP4.7□□□□□ -1.66
CD44-226ENST00000527889 XBP1P17861 261 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 POU3F2P20265 443 aaPredicted RBP4.7□□□□□ -1.66
CD44-226ENST00000527889 U2AF2P26368 475 aaKnown RBP eCLIP4.7□□□□□ -1.66
CD44-226ENST00000527889 MARCKSP29966 332 aaPredicted RBP4.7□□□□□ -1.66
CD44-226ENST00000527889 NTF4P34130 210 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 KRT2P35908 639 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 CAP2P40123 477 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 GRIA2P42262 883 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 SLC1A4P43007 532 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 TOB1P50616 345 aaPredicted RBP4.7□□□□□ -1.66
CD44-226ENST00000527889 NAPAP54920 295 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 NLRP5P59047 1200 aa4.7□□□□□ -1.66
CD44-226ENST00000527889 UBE2HP62256 183 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms