RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 HMX1Q9NP08 348 aaPredicted RBP22.92■■□□□ 1.26
VPS28-208ENST00000527797 PRMT7Q9NVM4 692 aaPredicted RBP22.92■■□□□ 1.26
VPS28-208ENST00000527797 EXTL3O43909 919 aa22.91■■□□□ 1.26
VPS28-208ENST00000527797 TOM1L1O75674 476 aa22.91■■□□□ 1.26
VPS28-208ENST00000527797 ASGR1P07306 291 aa22.91■■□□□ 1.26
VPS28-208ENST00000527797 TRIM21P19474 475 aaKnown RBP22.91■■□□□ 1.26
VPS28-208ENST00000527797 HOXC8P31273 242 aa22.91■■□□□ 1.26
VPS28-208ENST00000527797 KLK7P49862 253 aa22.91■■□□□ 1.26
VPS28-208ENST00000527797 NLRP11P59045 1033 aaKnown RBP22.91■■□□□ 1.26
VPS28-208ENST00000527797 GOLGA8FQ08AF8 430 aa22.91■■□□□ 1.26
VPS28-208ENST00000527797 GOLGA8DPQ0D2H9 430 aa22.91■■□□□ 1.26
VPS28-208ENST00000527797 PRPF4BQ13523 1007 aaKnown RBP22.91■■□□□ 1.26
VPS28-208ENST00000527797 NBPF20Q3BBV1 942 aa22.91■■□□□ 1.26
VPS28-208ENST00000527797 FIGNQ5HY92 759 aa22.91■■□□□ 1.26
VPS28-208ENST00000527797 RNF180Q86T96 592 aa22.91■■□□□ 1.26
VPS28-208ENST00000527797 CBWD2Q8IUF1 395 aa22.91■■□□□ 1.26
VPS28-208ENST00000527797 ZBTB45Q96K62 511 aaPredicted RBP22.91■■□□□ 1.26
VPS28-208ENST00000527797 ACO2Q99798 780 aaKnown RBP22.91■■□□□ 1.26
VPS28-208ENST00000527797 MMRN2Q9H8L6 949 aa22.91■■□□□ 1.26
VPS28-208ENST00000527797 ANKFY1Q9P2R3 1169 aa22.91■■□□□ 1.26
VPS28-208ENST00000527797 AGO2Q9UKV8 859 aaKnown RBP22.91■■□□□ 1.26
VPS28-208ENST00000527797 TREHO43280 583 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 MFAP3LO75121 409 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 LDHAP00338 332 aaKnown RBP22.9■■□□□ 1.26
VPS28-208ENST00000527797 FXR1P51114 621 aaKnown RBP eCLIP22.9■■□□□ 1.26
VPS28-208ENST00000527797 KCNMA1Q12791 1236 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 FAM187BQ17R55 369 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 CCSAPQ6IQ19 270 aaPredicted RBP22.9■■□□□ 1.26
VPS28-208ENST00000527797 RUFY4Q6ZNE9 571 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 FAM213AQ9BRX8 229 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 MSTO1Q9BUK6 570 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 MINDY3Q9H8M7 445 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 WBP1LQ9NX94 342 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 A0A0B4J269 797 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 ZNF233A6NK53 670 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 CLDN3O15551 220 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 ADRB2P07550 413 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 MCCD1P59942 119 aaPredicted RBP22.9■■□□□ 1.26
VPS28-208ENST00000527797 C1QTNF8P60827 252 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 ZNF200P98182 395 aaPredicted RBP22.9■■□□□ 1.26
VPS28-208ENST00000527797 TMEM132AQ24JP5 1023 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 TSHZ1Q6ZSZ6 1077 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 SRGAP1Q7Z6B7 1085 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 CCDC51Q96ER9 411 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 MFSD14AQ96MC6 490 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 TCHPQ9BT92 498 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 EIF2AK3Q9NZJ5 1116 aaKnown RBP22.9■■□□□ 1.26
VPS28-208ENST00000527797 CAPN11Q9UMQ6 739 aa22.9■■□□□ 1.26
VPS28-208ENST00000527797 SIP14410 1827 aa22.89■■□□□ 1.26
VPS28-208ENST00000527797 TTLL13PA6NNM8 815 aa22.89■■□□□ 1.25
VPS28-208ENST00000527797 TRIM49P0CI25 452 aa22.89■■□□□ 1.25
VPS28-208ENST00000527797 TRIM49CP0CI26 452 aa22.89■■□□□ 1.25
VPS28-208ENST00000527797 SKILP12757 684 aa22.89■■□□□ 1.25
VPS28-208ENST00000527797 MSNP26038 577 aaKnown RBP22.89■■□□□ 1.25
VPS28-208ENST00000527797 ATF7IP2Q5U623 682 aa22.89■■□□□ 1.25
VPS28-208ENST00000527797 USP37Q86T82 979 aa22.89■■□□□ 1.25
VPS28-208ENST00000527797 CCDC112Q8NEF3 446 aa22.89■■□□□ 1.25
VPS28-208ENST00000527797 NEK11Q8NG66 645 aa22.89■■□□□ 1.25
VPS28-208ENST00000527797 TMC2Q8TDI7 906 aa22.89■■□□□ 1.25
VPS28-208ENST00000527797 PRIMPOLQ96LW4 560 aa22.89■■□□□ 1.25
VPS28-208ENST00000527797 PANX2Q96RD6 677 aa22.89■■□□□ 1.25
VPS28-208ENST00000527797 CRACR2AQ9BSW2 395 aa22.89■■□□□ 1.25
VPS28-208ENST00000527797 FAM207AQ9NSI2 230 aaPredicted RBP22.89■■□□□ 1.25
VPS28-208ENST00000527797 GTF2IRD1Q9UHL9 959 aa22.89■■□□□ 1.25
VPS28-208ENST00000527797 LUC7L2Q9Y383 392 aaKnown RBP22.89■■□□□ 1.25
VPS28-208ENST00000527797 TTC26A0AVF1 554 aa22.88■■□□□ 1.25
VPS28-208ENST00000527797 GTPBP10A4D1E9 387 aaKnown RBP22.88■■□□□ 1.25
VPS28-208ENST00000527797 ESPNB1AK53 854 aa22.88■■□□□ 1.25
VPS28-208ENST00000527797 FMO5P49326 533 aa22.88■■□□□ 1.25
VPS28-208ENST00000527797 CCZ1BP86790 482 aa22.88■■□□□ 1.25
VPS28-208ENST00000527797 CCZ1P86791 482 aaPredicted RBP22.88■■□□□ 1.25
VPS28-208ENST00000527797 ENPEPQ07075 957 aa22.88■■□□□ 1.25
VPS28-208ENST00000527797 CYP24A1Q07973 514 aa22.88■■□□□ 1.25
VPS28-208ENST00000527797 GBP6Q6ZN66 633 aa22.88■■□□□ 1.25
VPS28-208ENST00000527797 NME8Q8N427 588 aa22.88■■□□□ 1.25
VPS28-208ENST00000527797 DNAJB3Q8WWF6 145 aa22.88■■□□□ 1.25
VPS28-208ENST00000527797 GCOM2Q9BZD3 368 aaPredicted RBP22.88■■□□□ 1.25
VPS28-208ENST00000527797 TTYH3Q9C0H2 523 aa22.88■■□□□ 1.25
VPS28-208ENST00000527797 HAPLN2Q9GZV7 340 aa22.88■■□□□ 1.25
VPS28-208ENST00000527797 ADAMTS10Q9H324 1103 aa22.88■■□□□ 1.25
VPS28-208ENST00000527797 A0A1W2PQJ5 194 aa22.87■■□□□ 1.25
VPS28-208ENST00000527797 B4GALT5O43286 388 aa22.87■■□□□ 1.25
VPS28-208ENST00000527797 STX10O60499 249 aa22.87■■□□□ 1.25
VPS28-208ENST00000527797 N4BP1O75113 896 aaKnown RBP22.87■■□□□ 1.25
VPS28-208ENST00000527797 GPR32O75388 356 aa22.87■■□□□ 1.25
VPS28-208ENST00000527797 CABYRO75952 493 aa22.87■■□□□ 1.25
VPS28-208ENST00000527797 IQCF3P0C7M6 154 aa22.87■■□□□ 1.25
VPS28-208ENST00000527797 KRT9P35527 623 aa22.87■■□□□ 1.25
VPS28-208ENST00000527797 DLG4P78352 724 aa22.87■■□□□ 1.25
VPS28-208ENST00000527797 EXOC3L4Q17RC7 722 aa22.87■■□□□ 1.25
VPS28-208ENST00000527797 KIZQ2M2Z5 673 aa22.87■■□□□ 1.25
VPS28-208ENST00000527797 TAF2Q6P1X5 1199 aa22.87■■□□□ 1.25
VPS28-208ENST00000527797 ZBTB33Q86T24 672 aa22.87■■□□□ 1.25
VPS28-208ENST00000527797 ZNF710Q8N1W2 664 aa22.87■■□□□ 1.25
VPS28-208ENST00000527797 LSM14BQ9BX40 385 aaKnown RBP22.87■■□□□ 1.25
VPS28-208ENST00000527797 TMX1Q9H3N1 280 aa22.87■■□□□ 1.25
VPS28-208ENST00000527797 TNFSF13BQ9Y275 285 aa22.87■■□□□ 1.25
VPS28-208ENST00000527797 PTPN22Q9Y2R2 807 aa22.87■■□□□ 1.25
VPS28-208ENST00000527797 RNF225M0QZC1 329 aaPredicted RBP22.86■■□□□ 1.25
VPS28-208ENST00000527797 MCL1Q07820 350 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms