RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 LRRIQ4A6NIV6 560 aa20.59■□□□□ 0.89
VPS28-207ENST00000526977 ABL1P00519 1130 aa20.59■□□□□ 0.89
VPS28-207ENST00000526977 GNAT1P11488 350 aa20.59■□□□□ 0.89
VPS28-207ENST00000526977 CASQ1P31415 396 aa20.59■□□□□ 0.89
VPS28-207ENST00000526977 CHMP4BP1P59074 171 aa20.59■□□□□ 0.89
VPS28-207ENST00000526977 TFDP1Q14186 410 aa20.59■□□□□ 0.89
VPS28-207ENST00000526977 MAP4K3Q8IVH8 894 aa20.59■□□□□ 0.89
VPS28-207ENST00000526977 NEK11Q8NG66 645 aa20.59■□□□□ 0.89
VPS28-207ENST00000526977 KIFC3Q9BVG8 833 aa20.59■□□□□ 0.89
VPS28-207ENST00000526977 NHEJ1Q9H9Q4 299 aaPredicted RBP20.59■□□□□ 0.89
VPS28-207ENST00000526977 NOL4O94818 638 aa20.58■□□□□ 0.89
VPS28-207ENST00000526977 ARHGAP25P42331 645 aa20.58■□□□□ 0.89
VPS28-207ENST00000526977 CASP4P49662 377 aa20.58■□□□□ 0.89
VPS28-207ENST00000526977 EFNA5P52803 228 aa20.58■□□□□ 0.89
VPS28-207ENST00000526977 CAPSQ13938 189 aa20.58■□□□□ 0.89
VPS28-207ENST00000526977 MYBPC2Q14324 1141 aa20.58■□□□□ 0.89
VPS28-207ENST00000526977 RHPN2Q8IUC4 686 aa20.58■□□□□ 0.89
VPS28-207ENST00000526977 C7orf31Q8N865 590 aa20.58■□□□□ 0.89
VPS28-207ENST00000526977 TMEM174Q8WUU8 243 aa20.58■□□□□ 0.89
VPS28-207ENST00000526977 LMBR1Q8WVP7 490 aa20.58■□□□□ 0.89
VPS28-207ENST00000526977 BAP1Q92560 729 aa20.58■□□□□ 0.89
VPS28-207ENST00000526977 TMEM134Q9H6X4 195 aa20.58■□□□□ 0.89
VPS28-207ENST00000526977 ADGRA3Q8IWK6 1321 aa20.58■□□□□ 0.89
VPS28-207ENST00000526977 MBLAC1A4D2B0 266 aaPredicted RBP20.58■□□□□ 0.88
VPS28-207ENST00000526977 K7ERI5 159 aa20.58■□□□□ 0.88
VPS28-207ENST00000526977 CLCN3P51790 818 aa20.58■□□□□ 0.88
VPS28-207ENST00000526977 POU5F1BQ06416 359 aa20.58■□□□□ 0.88
VPS28-207ENST00000526977 KCNA10Q16322 511 aa20.58■□□□□ 0.88
VPS28-207ENST00000526977 CCSAPQ6IQ19 270 aaPredicted RBP20.58■□□□□ 0.88
VPS28-207ENST00000526977 NFRKBQ6P4R8 1299 aa20.58■□□□□ 0.88
VPS28-207ENST00000526977 CCDC170Q8IYT3 715 aa20.58■□□□□ 0.88
VPS28-207ENST00000526977 CRACR2AQ9BSW2 395 aa20.58■□□□□ 0.88
VPS28-207ENST00000526977 C2orf40Q9H1Z8 148 aa20.58■□□□□ 0.88
VPS28-207ENST00000526977 SLC16A3O15427 465 aaKnown RBP20.57■□□□□ 0.88
VPS28-207ENST00000526977 ASGR1P07306 291 aa20.57■□□□□ 0.88
VPS28-207ENST00000526977 CDC42EP1Q00587 391 aa20.57■□□□□ 0.88
VPS28-207ENST00000526977 STRN3Q13033 797 aa20.57■□□□□ 0.88
VPS28-207ENST00000526977 CXCL17Q6UXB2 119 aa20.57■□□□□ 0.88
VPS28-207ENST00000526977 RRAGAQ7L523 313 aa20.57■□□□□ 0.88
VPS28-207ENST00000526977 ZNF710Q8N1W2 664 aa20.57■□□□□ 0.88
VPS28-207ENST00000526977 MAP7D2Q96T17 732 aa20.57■□□□□ 0.88
VPS28-207ENST00000526977 METTL14Q9HCE5 456 aaKnown RBP20.57■□□□□ 0.88
VPS28-207ENST00000526977 AGPAT3Q9NRZ7 376 aa20.57■□□□□ 0.88
VPS28-207ENST00000526977 URI1O94763 535 aaPredicted RBP20.56■□□□□ 0.88
VPS28-207ENST00000526977 SLU7O95391 586 aaKnown RBP20.56■□□□□ 0.88
VPS28-207ENST00000526977 SRGAP2CP0DJJ0 459 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 ADAM17P78536 824 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 PPP2R3AQ06190 1150 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 SLC9A9Q8IVB4 645 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 ZBTB8OSQ8IWT0 167 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 RNF149Q8NC42 400 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 BORCS6Q96GS4 357 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 C17orf102A2RUQ5 167 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 LRRC53A6NM62 1247 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 KIF5CO60282 957 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 CABYRO75952 493 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 EPB41P11171 864 aaKnown RBP20.56■□□□□ 0.88
VPS28-207ENST00000526977 CYLC1P35663 651 aaPredicted RBP20.56■□□□□ 0.88
VPS28-207ENST00000526977 ARHGAP29Q52LW3 1261 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 LHX8Q68G74 356 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 CDCA2Q69YH5 1023 aaPredicted RBP20.56■□□□□ 0.88
VPS28-207ENST00000526977 C12orf56Q8IXR9 622 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 ZBTB10Q96DT7 871 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 LSM14BQ9BX40 385 aaKnown RBP20.56■□□□□ 0.88
VPS28-207ENST00000526977 NFKBIZQ9BYH8 718 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 DMAC2Q9NW81 257 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 HDAC6Q9UBN7 1215 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 AKT3Q9Y243 479 aa20.56■□□□□ 0.88
VPS28-207ENST00000526977 SMIM35A0A1B0GVV1 85 aa20.55■□□□□ 0.88
VPS28-207ENST00000526977 EIF3CLB5ME19 914 aaKnown RBP20.55■□□□□ 0.88
VPS28-207ENST00000526977 HOXC8P31273 242 aa20.55■□□□□ 0.88
VPS28-207ENST00000526977 NAA30Q147X3 362 aaPredicted RBP20.55■□□□□ 0.88
VPS28-207ENST00000526977 PDXDC1Q6P996 788 aa20.55■□□□□ 0.88
VPS28-207ENST00000526977 CACNA2D4Q7Z3S7 1137 aa20.55■□□□□ 0.88
VPS28-207ENST00000526977 KIAA0319LQ8IZA0 1049 aa20.55■□□□□ 0.88
VPS28-207ENST00000526977 SH3TC2Q8TF17 1288 aa20.55■□□□□ 0.88
VPS28-207ENST00000526977 EIF3CQ99613 913 aaKnown RBP20.55■□□□□ 0.88
VPS28-207ENST00000526977 ARHGAP20Q9P2F6 1191 aa20.55■□□□□ 0.88
VPS28-207ENST00000526977 CEP350Q5VT06 3117 aa20.55■□□□□ 0.88
VPS28-207ENST00000526977 AFPP02771 609 aaKnown RBP20.54■□□□□ 0.88
VPS28-207ENST00000526977 MYCNP04198 464 aaPredicted RBP20.54■□□□□ 0.88
VPS28-207ENST00000526977 PLEKP08567 350 aaPredicted RBP20.54■□□□□ 0.88
VPS28-207ENST00000526977 KRT83P78385 493 aa20.54■□□□□ 0.88
VPS28-207ENST00000526977 SLC9C1Q4G0N8 1177 aa20.54■□□□□ 0.88
VPS28-207ENST00000526977 TAS1R3Q7RTX0 852 aa20.54■□□□□ 0.88
VPS28-207ENST00000526977 TSEN34Q9BSV6 310 aaKnown RBP20.54■□□□□ 0.88
VPS28-207ENST00000526977 CEP72Q9P209 647 aa20.54■□□□□ 0.88
VPS28-207ENST00000526977 KAT6AQ92794 2004 aa20.54■□□□□ 0.88
VPS28-207ENST00000526977 CENPFP49454 3210 aa20.54■□□□□ 0.88
VPS28-207ENST00000526977 MOXD2PA6NHM9 499 aa20.54■□□□□ 0.88
VPS28-207ENST00000526977 PSMC2P35998 433 aaKnown RBP20.54■□□□□ 0.88
VPS28-207ENST00000526977 APBA1Q02410 837 aa20.54■□□□□ 0.88
VPS28-207ENST00000526977 NBPF20Q3BBV1 942 aa20.54■□□□□ 0.88
VPS28-207ENST00000526977 ZNF569Q5MCW4 686 aa20.54■□□□□ 0.88
VPS28-207ENST00000526977 DPY19L2P1Q6NXN4 242 aa20.54■□□□□ 0.88
VPS28-207ENST00000526977 ARRDC4Q8NCT1 418 aa20.54■□□□□ 0.88
VPS28-207ENST00000526977 CCDC42Q96M95 316 aa20.54■□□□□ 0.88
VPS28-207ENST00000526977 NLRP4Q96MN2 994 aa20.54■□□□□ 0.88
VPS28-207ENST00000526977 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.54■□□□□ 0.883e-6■■□□□ 14.1
VPS28-207ENST00000526977 NLRC4Q9NPP4 1024 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms