RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 LTBRP36941 435 aa22.76■■□□□ 1.23
VPS28-206ENST00000526734 NDUFV1P49821 464 aa22.76■■□□□ 1.23
VPS28-206ENST00000526734 PRPF4BQ13523 1007 aaKnown RBP22.76■■□□□ 1.23
VPS28-206ENST00000526734 SMC1AQ14683 1233 aaKnown RBP22.76■■□□□ 1.23
VPS28-206ENST00000526734 DUSP6Q16828 381 aa22.76■■□□□ 1.23
VPS28-206ENST00000526734 TMC7Q7Z402 723 aa22.76■■□□□ 1.23
VPS28-206ENST00000526734 APBB1IPQ7Z5R6 666 aaPredicted RBP22.76■■□□□ 1.23
VPS28-206ENST00000526734 IGSF21Q96ID5 467 aa22.76■■□□□ 1.23
VPS28-206ENST00000526734 ADPGKQ9BRR6 497 aa22.76■■□□□ 1.23
VPS28-206ENST00000526734 REV3LO60673 3130 aa22.75■■□□□ 1.23
VPS28-206ENST00000526734 DMP1Q13316 513 aaPredicted RBP22.75■■□□□ 1.23
VPS28-206ENST00000526734 GIT2Q14161 759 aa22.75■■□□□ 1.23
VPS28-206ENST00000526734 TMEM132AQ24JP5 1023 aa22.75■■□□□ 1.23
VPS28-206ENST00000526734 PLPP4Q5VZY2 271 aa22.75■■□□□ 1.23
VPS28-206ENST00000526734 DDX53Q86TM3 631 aaKnown RBP22.75■■□□□ 1.23
VPS28-206ENST00000526734 CABP7Q86V35 215 aa22.75■■□□□ 1.23
VPS28-206ENST00000526734 CALML4Q96GE6 196 aa22.75■■□□□ 1.23
VPS28-206ENST00000526734 MYO7AQ13402 2215 aa22.74■■□□□ 1.23
VPS28-206ENST00000526734 ARL5CA6NH57 179 aa22.74■■□□□ 1.23
VPS28-206ENST00000526734 TBX10O75333 385 aa22.74■■□□□ 1.23
VPS28-206ENST00000526734 NPTXRO95502 500 aa22.74■■□□□ 1.23
VPS28-206ENST00000526734 PDIA4P13667 645 aaKnown RBP22.74■■□□□ 1.23
VPS28-206ENST00000526734 GTF2F1P35269 517 aaKnown RBP eCLIP22.74■■□□□ 1.23
VPS28-206ENST00000526734 UBA7P41226 1012 aa22.74■■□□□ 1.23
VPS28-206ENST00000526734 SLC11A1P49279 550 aa22.74■■□□□ 1.23
VPS28-206ENST00000526734 SMAD4Q13485 552 aaKnown RBP22.74■■□□□ 1.23
VPS28-206ENST00000526734 SF3A1Q15459 793 aaKnown RBP22.74■■□□□ 1.23
VPS28-206ENST00000526734 ZRSR1Q15695 479 aaKnown RBP22.74■■□□□ 1.23
VPS28-206ENST00000526734 TMEM119Q4V9L6 283 aa22.74■■□□□ 1.23
VPS28-206ENST00000526734 RINT1Q6NUQ1 792 aa22.74■■□□□ 1.23
VPS28-206ENST00000526734 C1orf186Q6ZWK4 172 aa22.74■■□□□ 1.23
VPS28-206ENST00000526734 SYT2Q8N9I0 419 aaPredicted RBP22.74■■□□□ 1.23
VPS28-206ENST00000526734 PNMA5Q96PV4 448 aa22.74■■□□□ 1.23
VPS28-206ENST00000526734 GBP3Q9H0R5 595 aa22.74■■□□□ 1.23
VPS28-206ENST00000526734 NXF3Q9H4D5 531 aaKnown RBP22.74■■□□□ 1.23
VPS28-206ENST00000526734 PRKAG3Q9UGI9 489 aa22.74■■□□□ 1.23
VPS28-206ENST00000526734 CD207Q9UJ71 328 aa22.74■■□□□ 1.23
VPS28-206ENST00000526734 RBM19Q9Y4C8 960 aaKnown RBP22.74■■□□□ 1.23
VPS28-206ENST00000526734 HIP1RO75146 1068 aa22.73■■□□□ 1.23
VPS28-206ENST00000526734 NR1I2O75469 434 aa22.73■■□□□ 1.23
VPS28-206ENST00000526734 ALDH2P05091 517 aa22.73■■□□□ 1.23
VPS28-206ENST00000526734 MLH1P40692 756 aa22.73■■□□□ 1.23
VPS28-206ENST00000526734 RESTQ13127 1097 aa22.73■■□□□ 1.23
VPS28-206ENST00000526734 DCAF4L1Q3SXM0 396 aa22.73■■□□□ 1.23
VPS28-206ENST00000526734 KCNK18Q7Z418 384 aa22.73■■□□□ 1.23
VPS28-206ENST00000526734 RBM23Q86U06 439 aaKnown RBP22.73■■□□□ 1.23
VPS28-206ENST00000526734 ZNF280BQ86YH2 543 aa22.73■■□□□ 1.23
VPS28-206ENST00000526734 MRPL43Q8N983 215 aaKnown RBP22.73■■□□□ 1.23
VPS28-206ENST00000526734 GAD1Q99259 594 aa22.73■■□□□ 1.23
VPS28-206ENST00000526734 RUSC1Q9BVN2 902 aa22.73■■□□□ 1.23
VPS28-206ENST00000526734 ZSCAN16Q9H4T2 348 aaPredicted RBP22.73■■□□□ 1.23
VPS28-206ENST00000526734 PDZD7Q9H5P4 517 aa22.73■■□□□ 1.23
VPS28-206ENST00000526734 DNAJB4Q9UDY4 337 aa22.73■■□□□ 1.23
VPS28-206ENST00000526734 PCDHGC5Q9Y5F6 944 aa22.73■■□□□ 1.23
VPS28-206ENST00000526734 IRAK3Q9Y616 596 aa22.73■■□□□ 1.23
VPS28-206ENST00000526734 NT5C1B-RDH14C9J2C7 533 aa22.72■■□□□ 1.23
VPS28-206ENST00000526734 K7ERI5 159 aa22.72■■□□□ 1.23
VPS28-206ENST00000526734 LINC01565O15544 149 aa22.72■■□□□ 1.23
VPS28-206ENST00000526734 POMCP01189 267 aa22.72■■□□□ 1.23
VPS28-206ENST00000526734 COASYQ13057 564 aa22.72■■□□□ 1.23
VPS28-206ENST00000526734 TMEM184AQ6ZMB5 413 aa22.72■■□□□ 1.23
VPS28-206ENST00000526734 HSCBQ8IWL3 235 aa22.72■■□□□ 1.23
VPS28-206ENST00000526734 FAM178BQ8IXR5 827 aa22.72■■□□□ 1.23
VPS28-206ENST00000526734 DAW1Q8N136 415 aa22.72■■□□□ 1.23
VPS28-206ENST00000526734 MSLNLQ96KJ4 702 aa22.72■■□□□ 1.23
VPS28-206ENST00000526734 APOL6Q9BWW8 343 aa22.72■■□□□ 1.23
VPS28-206ENST00000526734 ZBP1Q9H171 429 aa22.72■■□□□ 1.23
VPS28-206ENST00000526734 RNF39Q9H2S5 420 aa22.72■■□□□ 1.23
VPS28-206ENST00000526734 TMEM134Q9H6X4 195 aa22.72■■□□□ 1.23
VPS28-206ENST00000526734 FAN1Q9Y2M0 1017 aa22.72■■□□□ 1.23
VPS28-206ENST00000526734 HES2Q9Y543 173 aa22.72■■□□□ 1.23
VPS28-206ENST00000526734 MORC2Q9Y6X9 1032 aaPredicted RBP22.72■■□□□ 1.23
VPS28-206ENST00000526734 CCDC169A6NNP5 214 aa22.71■■□□□ 1.23
VPS28-206ENST00000526734 DDHD2O94830 711 aa22.71■■□□□ 1.23
VPS28-206ENST00000526734 SSBP05455 408 aaKnown RBP eCLIP22.71■■□□□ 1.23
VPS28-206ENST00000526734 CTSAP10619 480 aa22.71■■□□□ 1.23
VPS28-206ENST00000526734 IL9P15248 144 aa22.71■■□□□ 1.23
VPS28-206ENST00000526734 NPTX2P47972 431 aa22.71■■□□□ 1.23
VPS28-206ENST00000526734 PEX3P56589 373 aa22.71■■□□□ 1.23
VPS28-206ENST00000526734 DSC1Q08554 894 aa22.71■■□□□ 1.23
VPS28-206ENST00000526734 GRIK3Q13003 919 aa22.71■■□□□ 1.23
VPS28-206ENST00000526734 MAPK7Q13164 816 aa22.71■■□□□ 1.23
VPS28-206ENST00000526734 VPS52Q8N1B4 723 aa22.71■■□□□ 1.23
VPS28-206ENST00000526734 SPIRE2Q8WWL2 714 aa22.71■■□□□ 1.23
VPS28-206ENST00000526734 NECAB3Q96P71 396 aaPredicted RBP22.71■■□□□ 1.23
VPS28-206ENST00000526734 RPS6KC1Q96S38 1066 aa22.71■■□□□ 1.23
VPS28-206ENST00000526734 KMT5AQ9NQR1 393 aa22.71■■□□□ 1.23
VPS28-206ENST00000526734 ARHGAP28Q9P2N2 729 aa22.71■■□□□ 1.23
VPS28-206ENST00000526734 C2orf71A6NGG8 1288 aa22.7■■□□□ 1.22
VPS28-206ENST00000526734 MBTPS2O43462 519 aa22.7■■□□□ 1.22
VPS28-206ENST00000526734 STX6O43752 255 aa22.7■■□□□ 1.22
VPS28-206ENST00000526734 GLP2RO95838 553 aa22.7■■□□□ 1.22
VPS28-206ENST00000526734 PLA2G4BP0C869 781 aa22.7■■□□□ 1.22
VPS28-206ENST00000526734 SCP2P22307 547 aa22.7■■□□□ 1.22
VPS28-206ENST00000526734 SCNN1GP51170 649 aa22.7■■□□□ 1.22
VPS28-206ENST00000526734 AFF1P51825 1210 aaKnown RBP22.7■■□□□ 1.22
VPS28-206ENST00000526734 SLC12A3P55017 1021 aa22.7■■□□□ 1.22
VPS28-206ENST00000526734 DLX2Q07687 328 aaPredicted RBP22.7■■□□□ 1.22
VPS28-206ENST00000526734 SMAD2Q15796 467 aaKnown RBP22.7■■□□□ 1.22
VPS28-206ENST00000526734 TMEM173Q86WV6 379 aaPredicted RBP22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms