RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 RDM1Q8NG50 284 aa22.9■■□□□ 1.26
VPS28-205ENST00000526204 PLEKHO2Q8TD55 490 aa22.9■■□□□ 1.26
VPS28-205ENST00000526204 EPS8L1Q8TE68 723 aa22.9■■□□□ 1.26
VPS28-205ENST00000526204 FMO2Q99518 471 aa22.9■■□□□ 1.26
VPS28-205ENST00000526204 DPH5Q9H2P9 285 aa22.9■■□□□ 1.26
VPS28-205ENST00000526204 HOMER2Q9NSB8 354 aa22.9■■□□□ 1.26
VPS28-205ENST00000526204 RASAL2Q9UJF2 1139 aa22.9■■□□□ 1.26
VPS28-205ENST00000526204 CTDP1Q9Y5B0 961 aaPredicted RBP22.9■■□□□ 1.26
VPS28-205ENST00000526204 FLT3P36888 993 aa22.89■■□□□ 1.25
VPS28-205ENST00000526204 USP8P40818 1118 aa22.89■■□□□ 1.25
VPS28-205ENST00000526204 GUCY1A3Q02108 690 aa22.89■■□□□ 1.25
VPS28-205ENST00000526204 UGCGQ16739 394 aa22.89■■□□□ 1.25
VPS28-205ENST00000526204 XKR9Q5GH70 373 aa22.89■■□□□ 1.25
VPS28-205ENST00000526204 CENPHQ9H3R5 247 aa22.89■■□□□ 1.25
VPS28-205ENST00000526204 NOCTQ9UK39 431 aaKnown RBP22.89■■□□□ 1.25
VPS28-205ENST00000526204 TBX20Q9UMR3 447 aa22.89■■□□□ 1.25
VPS28-205ENST00000526204 PPFIA2O75334 1257 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 GGPS1O95749 300 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 EIF3BP55884 814 aaKnown RBP22.88■■□□□ 1.25
VPS28-205ENST00000526204 RASA3Q14644 834 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 SNRNP35Q16560 246 aaKnown RBP22.88■■□□□ 1.25
VPS28-205ENST00000526204 NBPF9Q3BBW0 867 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 FAM102BQ5T8I3 360 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 KRT39Q6A163 491 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 XRRA1Q6P2D8 792 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 ZSWIM1Q9BR11 485 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 WNT8AQ9H1J5 351 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 FAM169AQ9Y6X4 670 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 A0A087WUV0 522 aaPredicted RBP22.88■■□□□ 1.25
VPS28-205ENST00000526204 MYO1FO00160 1098 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 SGPL1O95470 568 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 FDX1P10109 184 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 CHRNA3P32297 505 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 GBP1P32455 592 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 ZNF211Q13398 564 aaPredicted RBP22.88■■□□□ 1.25
VPS28-205ENST00000526204 PTGISQ16647 500 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 USP37Q86T82 979 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 PPM1KQ8N3J5 372 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 ATP8B4Q8TF62 1192 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 SHC3Q92529 594 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 RMDN3Q96TC7 470 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 PDCD2LQ9BRP1 358 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 TRIM51Q9BSJ1 452 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 GPRC5CQ9NQ84 441 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 COQ4Q9Y3A0 265 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 COL4A5P29400 1685 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 RGPD3A6NKT7 1758 aaPredicted RBP22.88■■□□□ 1.25
VPS28-205ENST00000526204 RGPD4Q7Z3J3 1758 aa22.88■■□□□ 1.25
VPS28-205ENST00000526204 ZBED4O75132 1171 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 MYCLP12524 364 aaPredicted RBP22.87■■□□□ 1.25
VPS28-205ENST00000526204 DMP1Q13316 513 aaPredicted RBP22.87■■□□□ 1.25
VPS28-205ENST00000526204 NOP9Q86U38 636 aaKnown RBP22.87■■□□□ 1.25
VPS28-205ENST00000526204 MAP4K3Q8IVH8 894 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 TMEM161BQ8NDZ6 487 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 OR2W6PQ8NHA6 318 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 RABEP2Q9H5N1 569 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 C17orf75Q9HAS0 396 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 PXMP2Q9NR77 195 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 TMOD4Q9NZQ9 345 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 BCS1LQ9Y276 419 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 PHF2O75151 1096 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 ADRB2P07550 413 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 CHRNB2P17787 502 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 MAP2K1Q02750 393 aaPredicted RBP22.87■■□□□ 1.25
VPS28-205ENST00000526204 ZSWIM2Q8NEG5 633 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 TMC2Q8TDI7 906 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 PCDHB18PQ96TA0 734 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 SH2D3AQ9BRG2 576 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 TXLNGYQ9BZA5 131 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 TMEM8AQ9HCN3 771 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 MYOZ2Q9NPC6 264 aa22.87■■□□□ 1.25
VPS28-205ENST00000526204 ATXN2Q99700 1313 aaKnown RBP22.86■■□□□ 1.25
VPS28-205ENST00000526204 TMEM150BA6NC51 233 aa22.86■■□□□ 1.25
VPS28-205ENST00000526204 CCDC169A6NNP5 214 aa22.86■■□□□ 1.25
VPS28-205ENST00000526204 CNGA1P29973 690 aa22.86■■□□□ 1.25
VPS28-205ENST00000526204 HPDP32754 393 aaPredicted RBP22.86■■□□□ 1.25
VPS28-205ENST00000526204 GTF2H1P32780 548 aa22.86■■□□□ 1.25
VPS28-205ENST00000526204 NPTX2P47972 431 aa22.86■■□□□ 1.25
VPS28-205ENST00000526204 GPC3P51654 580 aa22.86■■□□□ 1.25
VPS28-205ENST00000526204 TNFAIP1Q13829 316 aa22.86■■□□□ 1.25
VPS28-205ENST00000526204 ARHGEF16Q5VV41 709 aa22.86■■□□□ 1.25
VPS28-205ENST00000526204 RNF207Q6ZRF8 634 aa22.86■■□□□ 1.25
VPS28-205ENST00000526204 ADAT2Q7Z6V5 191 aaKnown RBP22.86■■□□□ 1.25
VPS28-205ENST00000526204 JAMLQ86YT9 394 aa22.86■■□□□ 1.25
VPS28-205ENST00000526204 CBWD2Q8IUF1 395 aa22.86■■□□□ 1.25
VPS28-205ENST00000526204 PARD3BQ8TEW8 1205 aa22.86■■□□□ 1.25
VPS28-205ENST00000526204 KAT5Q92993 513 aa22.86■■□□□ 1.25
VPS28-205ENST00000526204 KREMEN1Q96MU8 473 aa22.86■■□□□ 1.25
VPS28-205ENST00000526204 TRIM31Q9BZY9 425 aa22.86■■□□□ 1.25
VPS28-205ENST00000526204 ERVK-5Q9HDB9 667 aa22.86■■□□□ 1.25
VPS28-205ENST00000526204 GOLGA8IPA6NC78 632 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 GOLGA8JA6NMD2 632 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 CTNND1O60716 968 aaKnown RBP22.85■■□□□ 1.25
VPS28-205ENST00000526204 ATP9AO75110 1047 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 CCNE2O96020 404 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 ADSSP30520 456 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 CXCL9Q07325 125 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 SEL1L2Q5TEA6 688 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 ZNF746Q6NUN9 644 aaPredicted RBP22.85■■□□□ 1.25
VPS28-205ENST00000526204 OTUD6AQ7L8S5 288 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms