RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ZC3H11AO75152 810 aaKnown RBP eCLIP11.23□□□□□ -0.617e-6■■■■■ 33.7
VPS28-204ENST00000526054 PPP6R2O75170 966 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 MAFO75444 373 aaPredicted RBP11.23□□□□□ -0.61
VPS28-204ENST00000526054 DGAT1O75907 488 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 HOXB8P17481 243 aaPredicted RBP11.23□□□□□ -0.61
VPS28-204ENST00000526054 NCLP19338 710 aaKnown RBP11.23□□□□□ -0.61
VPS28-204ENST00000526054 SP100P23497 879 aaPredicted RBP11.23□□□□□ -0.61
VPS28-204ENST00000526054 CDC25AP30304 524 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 DDIT3P35638 169 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 PHKA2P46019 1235 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 ALDH7A1P49419 539 aaKnown RBP11.23□□□□□ -0.61
VPS28-204ENST00000526054 RARRES1P49788 294 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 ZXDAP98168 799 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 CDC42EP1Q00587 391 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 DNM1Q05193 864 aaKnown RBP11.23□□□□□ -0.61
VPS28-204ENST00000526054 EMC2Q15006 297 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 ZRSR1Q15695 479 aaKnown RBP11.23□□□□□ -0.61
VPS28-204ENST00000526054 TWF2Q6IBS0 349 aaKnown RBP11.23□□□□□ -0.61
VPS28-204ENST00000526054 SYCE2Q6PIF2 218 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 BMP8AQ7Z5Y6 402 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 ZNF410Q86VK4 478 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 RHPN2Q8IUC4 686 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 PIGOQ8TEQ8 1089 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 TCP11Q8WWU5 503 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 RSPH1Q8WYR4 309 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 PBXIP1Q96AQ6 731 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 TMEM169Q96HH4 297 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 NLRP4Q96MN2 994 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 CEP89Q96ST8 783 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 MTRQ99707 1265 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 FDXACB1Q9BRP7 624 aaPredicted RBP11.23□□□□□ -0.61
VPS28-204ENST00000526054 CSRNP2Q9H175 543 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 S1PR5Q9H228 398 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 DHX33Q9H6R0 707 aaKnown RBP11.23□□□□□ -0.61
VPS28-204ENST00000526054 CHST12Q9NRB3 414 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 DDX19AQ9NUU7 478 aaKnown RBP11.23□□□□□ -0.61
VPS28-204ENST00000526054 CIZ1Q9ULV3 898 aaPredicted RBP11.23□□□□□ -0.61
VPS28-204ENST00000526054 HCFC2Q9Y5Z7 792 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 IGKV6-21A0A0C4DH24 114 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 C2orf71A6NGG8 1288 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 NT5C1B-RDH14C9J2C7 533 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 ZBTB39O15060 712 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 USO1O60763 962 aaKnown RBP11.22□□□□□ -0.61
VPS28-204ENST00000526054 SKIP12755 728 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 MRE11P49959 708 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 RAB27AP51159 221 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 BCAR1P56945 870 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 GRIN1Q05586 938 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 SIGLEC14Q08ET2 396 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 BMS1Q14692 1282 aaKnown RBP11.22□□□□□ -0.61
VPS28-204ENST00000526054 PTPN21Q16825 1174 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 TPRNQ4KMQ1 711 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 HYIQ5T013 277 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 GLB1LQ6UWU2 654 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 CATSPER4Q7RTX7 472 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 ZBTB33Q86T24 672 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 MRPL43Q8N983 215 aaKnown RBP11.22□□□□□ -0.61
VPS28-204ENST00000526054 MCPH1Q8NEM0 835 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 MMTAG2Q9BU76 263 aaKnown RBP11.22□□□□□ -0.61
VPS28-204ENST00000526054 TRAIPQ9BWF2 469 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 INO80BQ9C086 356 aaPredicted RBP11.22□□□□□ -0.61
VPS28-204ENST00000526054 CCSER1Q9C0I3 900 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 BMP2KQ9NSY1 1161 aaPredicted RBP11.22□□□□□ -0.61
VPS28-204ENST00000526054 SUCLA2Q9P2R7 463 aaPredicted RBP11.22□□□□□ -0.61
VPS28-204ENST00000526054 CCDC39Q9UFE4 941 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 DNM3Q9UQ16 869 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 INPP5FQ9Y2H2 1132 aa11.22□□□□□ -0.61
VPS28-204ENST00000526054 MYH11P35749 1972 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.21□□□□□ -0.61
VPS28-204ENST00000526054 CARNS1A5YM72 827 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 CUTAO60888 179 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 ME1P48163 572 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 RNASELQ05823 741 aaKnown RBP11.21□□□□□ -0.61
VPS28-204ENST00000526054 ECM1Q16610 540 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 LONRF3Q496Y0 759 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 TMEM119Q4V9L6 283 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 CES5AQ6NT32 575 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 PADI6Q6TGC4 694 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 TMEM173Q86WV6 379 aaPredicted RBP11.21□□□□□ -0.61
VPS28-204ENST00000526054 KSR1Q8IVT5 923 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 FBXL6Q8N531 539 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 ZNF579Q8NAF0 562 aaKnown RBP11.21□□□□□ -0.61
VPS28-204ENST00000526054 TMEM87AQ8NBN3 555 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 PSPC1Q8WXF1 523 aaKnown RBP11.21□□□□□ -0.61
VPS28-204ENST00000526054 LPPQ93052 612 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 SPATA32Q96LK8 384 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 CLIC6Q96NY7 704 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 PNMA5Q96PV4 448 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 ZBP1Q9H171 429 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 BHMT2Q9H2M3 363 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 FAM105AQ9NUU6 356 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 CDH22Q9UJ99 828 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 NR2E1Q9Y466 385 aa11.21□□□□□ -0.61
VPS28-204ENST00000526054 DENND4AQ7Z401 1863 aa11.21□□□□□ -0.62
VPS28-204ENST00000526054 A0A087WWV3 80 aa11.2□□□□□ -0.62
VPS28-204ENST00000526054 E9PMD0 336 aa11.2□□□□□ -0.62
VPS28-204ENST00000526054 CLASP2O75122 1294 aaKnown RBP11.2□□□□□ -0.62
VPS28-204ENST00000526054 ITIH3Q06033 890 aa11.2□□□□□ -0.62
VPS28-204ENST00000526054 KARSQ15046 597 aaKnown RBP11.2□□□□□ -0.62
VPS28-204ENST00000526054 NOMO2Q5JPE7 1267 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms