RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 SHDQ96IW2 340 aa13.05□□□□□ -0.32
SDCBP-211ENST00000523441 KXD1Q9BQD3 176 aa13.05□□□□□ -0.32
SDCBP-211ENST00000523441 TMEM175Q9BSA9 504 aa13.05□□□□□ -0.32
SDCBP-211ENST00000523441 LSG1Q9H089 658 aaKnown RBP13.05□□□□□ -0.32
SDCBP-211ENST00000523441 ANO2Q9NQ90 1003 aa13.05□□□□□ -0.32
SDCBP-211ENST00000523441 CACNG4Q9UBN1 327 aa13.05□□□□□ -0.32
SDCBP-211ENST00000523441 DPP7Q9UHL4 492 aa13.05□□□□□ -0.32
SDCBP-211ENST00000523441 CHD8Q9HCK8 2581 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 KANSL1LA0AUZ9 987 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 SCNN1GP51170 649 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 JAK3P52333 1124 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 FGD1P98174 961 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 TARBP2Q15633 366 aaKnown RBP13.04□□□□□ -0.32
SDCBP-211ENST00000523441 MLF2Q15773 248 aaPredicted RBP13.04□□□□□ -0.32
SDCBP-211ENST00000523441 PFKFB3Q16875 520 aaPredicted RBP13.04□□□□□ -0.32
SDCBP-211ENST00000523441 PRSS55Q6UWB4 352 aaPredicted RBP13.04□□□□□ -0.32
SDCBP-211ENST00000523441 ZNF410Q86VK4 478 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 SGMS1Q86VZ5 419 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 CRYGNQ8WXF5 182 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 ING5Q8WYH8 240 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 NXPE3Q969Y0 559 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 TMEM143Q96AN5 459 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 LENG9Q96B70 501 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 CPB2Q96IY4 423 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 ZFP42Q96MM3 310 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 GAD1Q99259 594 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 PRKD2Q9BZL6 878 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 MINDY3Q9H8M7 445 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 AGPAT5Q9NUQ2 364 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.04□□□□□ -0.32
SDCBP-211ENST00000523441 KANSL3Q9P2N6 904 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 SSX2IPQ9Y2D8 614 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 HES2Q9Y543 173 aa13.04□□□□□ -0.32
SDCBP-211ENST00000523441 ANHXE9PGG2 379 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 CCL16O15467 120 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 ZNF623O75123 536 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 SFNP31947 248 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 STARD6P59095 220 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 CDC42EP1Q00587 391 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 SPEM2Q0P670 501 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 SLC44A4Q53GD3 710 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 XKR3Q5GH77 459 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 UBXN11Q5T124 520 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 TPRG1Q6ZUI0 275 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 COLGALT2Q8IYK4 626 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 HASPINQ8TF76 798 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 TRAIPQ9BWF2 469 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 EIF2AQ9BY44 585 aaKnown RBP13.03□□□□□ -0.32
SDCBP-211ENST00000523441 SLC2A4RGQ9NR83 387 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 MIOSQ9NXC5 875 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 COL4A3BPQ9Y5P4 624 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 RALGAPA1Q6GYQ0 2036 aa13.03□□□□□ -0.32
SDCBP-211ENST00000523441 ARL5CA6NH57 179 aa13.02□□□□□ -0.33
SDCBP-211ENST00000523441 SPTLC1O15269 473 aa13.02□□□□□ -0.33
SDCBP-211ENST00000523441 MAFO75444 373 aaPredicted RBP13.02□□□□□ -0.33
SDCBP-211ENST00000523441 NR1I2O75469 434 aa13.02□□□□□ -0.33
SDCBP-211ENST00000523441 CPA1P15085 419 aa13.02□□□□□ -0.33
SDCBP-211ENST00000523441 SDHBP21912 280 aa13.02□□□□□ -0.33
SDCBP-211ENST00000523441 NPEPPSP55786 919 aa13.02□□□□□ -0.33
SDCBP-211ENST00000523441 LMNB2Q03252 620 aa13.02□□□□□ -0.33
SDCBP-211ENST00000523441 CEP57Q86XR8 500 aa13.02□□□□□ -0.33
SDCBP-211ENST00000523441 ZNF579Q8NAF0 562 aaKnown RBP13.02□□□□□ -0.33
SDCBP-211ENST00000523441 SMG8Q8ND04 991 aaKnown RBP13.02□□□□□ -0.33
SDCBP-211ENST00000523441 RSPH1Q8WYR4 309 aa13.02□□□□□ -0.33
SDCBP-211ENST00000523441 SLC5A5Q92911 643 aa13.02□□□□□ -0.33
SDCBP-211ENST00000523441 NIFKQ9BYG3 293 aaKnown RBP13.02□□□□□ -0.33
SDCBP-211ENST00000523441 GPR62Q9BZJ7 368 aa13.02□□□□□ -0.33
SDCBP-211ENST00000523441 ZMYND12Q9H0C1 365 aa13.02□□□□□ -0.33
SDCBP-211ENST00000523441 SLKQ9H2G2 1235 aaPredicted RBP13.02□□□□□ -0.33
SDCBP-211ENST00000523441 IFT122Q9HBG6 1241 aa13.02□□□□□ -0.33
SDCBP-211ENST00000523441 PARD6AQ9NPB6 346 aa13.02□□□□□ -0.33
SDCBP-211ENST00000523441 FAM217BQ9NTX9 383 aaPredicted RBP13.02□□□□□ -0.33
SDCBP-211ENST00000523441 KLK14Q9P0G3 267 aa13.02□□□□□ -0.33
SDCBP-211ENST00000523441 STK39Q9UEW8 545 aa13.02□□□□□ -0.33
SDCBP-211ENST00000523441 GMEB2Q9UKD1 530 aa13.02□□□□□ -0.33
SDCBP-211ENST00000523441 NDRG2Q9UN36 371 aaKnown RBP13.02□□□□□ -0.33
SDCBP-211ENST00000523441 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.02□□□□□ -0.33
SDCBP-211ENST00000523441 ZFHX4Q86UP3 3567 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 ERLIN2O94905 339 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 STBD1O95210 358 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 TDP2O95551 362 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 DSG1Q02413 1049 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 AAMPQ13685 434 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 PPM1JQ5JR12 505 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 PPM1LQ5SGD2 360 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 FUT10Q6P4F1 479 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 CYP26C1Q6V0L0 522 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 PRR23BQ6ZRT6 265 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 MRPL10Q7Z7H8 261 aaKnown RBP13.01□□□□□ -0.33
SDCBP-211ENST00000523441 CDR2LQ86X02 465 aaPredicted RBP13.01□□□□□ -0.33
SDCBP-211ENST00000523441 ITFG1Q8TB96 612 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 CCDC12Q8WUD4 166 aaPredicted RBP13.01□□□□□ -0.33
SDCBP-211ENST00000523441 PRPF31Q8WWY3 499 aaKnown RBP13.01□□□□□ -0.33
SDCBP-211ENST00000523441 CEP89Q96ST8 783 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 RIT2Q99578 217 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 COLEC11Q9BWP8 271 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 PLEKHA4Q9H4M7 779 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 RXFP1Q9HBX9 757 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 LTB4R2Q9NPC1 389 aa13.01□□□□□ -0.33
SDCBP-211ENST00000523441 ZSCAN32Q9NX65 697 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms