RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 DDX3XO00571 662 aaKnown RBP eCLIP10.93□□□□□ -0.66
MCF2-209ENST00000520602 DAPK3O43293 454 aa10.93□□□□□ -0.66
MCF2-209ENST00000520602 RAD51CO43502 376 aa10.93□□□□□ -0.66
MCF2-209ENST00000520602 STAT5BP51692 787 aa10.93□□□□□ -0.66
MCF2-209ENST00000520602 HNRNPH2P55795 449 aaKnown RBP10.93□□□□□ -0.66
MCF2-209ENST00000520602 BPIFB4P59827 614 aa10.93□□□□□ -0.66
MCF2-209ENST00000520602 TRIP13Q15645 432 aaPredicted RBP10.93□□□□□ -0.66
MCF2-209ENST00000520602 HGSNATQ68CP4 663 aa10.93□□□□□ -0.66
MCF2-209ENST00000520602 WDR93Q6P2C0 686 aa10.93□□□□□ -0.66
MCF2-209ENST00000520602 MMGT1Q8N4V1 131 aa10.93□□□□□ -0.66
MCF2-209ENST00000520602 RNPC3Q96LT9 517 aaKnown RBP10.93□□□□□ -0.66
MCF2-209ENST00000520602 MBOAT7Q96N66 472 aa10.93□□□□□ -0.66
MCF2-209ENST00000520602 TARS2Q9BW92 718 aaKnown RBP10.93□□□□□ -0.66
MCF2-209ENST00000520602 RAB20Q9NX57 234 aa10.93□□□□□ -0.66
MCF2-209ENST00000520602 RBAKQ9NYW8 714 aaPredicted RBP10.93□□□□□ -0.66
MCF2-209ENST00000520602 RAB21Q9UL25 225 aa10.93□□□□□ -0.66
MCF2-209ENST00000520602 AGTPBP1Q9UPW5 1226 aa10.93□□□□□ -0.66
MCF2-209ENST00000520602 PTPRAP18433 802 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 MUTP22033 750 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 FECHP22830 423 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 PTGER2P43116 358 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 CNTN2Q02246 1040 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 UGCGQ16739 394 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 C4orf19Q8IY42 314 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 ZNF564Q8TBZ8 553 aaPredicted RBP10.92□□□□□ -0.66
MCF2-209ENST00000520602 C11orf70Q9BRQ4 267 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 ACP6Q9NPH0 428 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 WRAP73Q9P2S5 460 aaPredicted RBP10.92□□□□□ -0.66
MCF2-209ENST00000520602 FBXO40Q9UH90 709 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 HPCAL4Q9UM19 191 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 TNRC6CQ9HCJ0 1690 aaKnown RBP10.92□□□□□ -0.66
MCF2-209ENST00000520602 UBE4BO95155 1302 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 CCDC188H7C350 402 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 IFNB1P01574 187 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 ACTN2P35609 894 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 MRPS9P82933 396 aaKnown RBP10.92□□□□□ -0.66
MCF2-209ENST00000520602 EMC2Q15006 297 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 C2CD6Q53TS8 623 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 USP38Q8NB14 1042 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 BBXQ8WY36 941 aaPredicted RBP10.92□□□□□ -0.66
MCF2-209ENST00000520602 KAT5Q92993 513 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 ZBTB22O15209 634 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 TTI1O43156 1089 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 PEX10O60683 326 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 DDNO94850 711 aaPredicted RBP10.92□□□□□ -0.66
MCF2-209ENST00000520602 SGPL1O95470 568 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 DESP17661 470 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 LACTBP83111 547 aaPredicted RBP10.92□□□□□ -0.66
MCF2-209ENST00000520602 DENND2CQ68D51 928 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 CPLX4Q7Z7G2 160 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 RHPN2Q8IUC4 686 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 TAB3Q8N5C8 712 aaPredicted RBP10.92□□□□□ -0.66
MCF2-209ENST00000520602 GPRASP2Q96D09 838 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 FAM84AQ96KN4 292 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 PAIP2Q9BPZ3 127 aaKnown RBP10.92□□□□□ -0.66
MCF2-209ENST00000520602 HEMGNQ9BXL5 484 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 CELF4Q9BZC1 486 aaKnown RBP10.92□□□□□ -0.66
MCF2-209ENST00000520602 KCNK9Q9NPC2 374 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 AKT3Q9Y243 479 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 MYH1P12882 1939 aa10.92□□□□□ -0.66
MCF2-209ENST00000520602 NRAPQ86VF7 1730 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.91□□□□□ -0.66
MCF2-209ENST00000520602 ANKRD65E5RJM6 399 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 GOLGA8SH3BPF8 625 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 MAFGO15525 162 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 TNNC2P02585 160 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 PRLRP16471 622 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 ADCY8P40145 1251 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 PPP3CAQ08209 521 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 MTMR3Q13615 1198 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 PPP2R5EQ16537 467 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 GPR162Q16538 588 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 SLFN12LQ6IEE8 588 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 CDR2LQ86X02 465 aaPredicted RBP10.91□□□□□ -0.66
MCF2-209ENST00000520602 TAS1R2Q8TE23 839 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 A1CFQ9NQ94 594 aaKnown RBP10.91□□□□□ -0.66
MCF2-209ENST00000520602 CYP26B1Q9NR63 512 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 DNAJC17Q9NVM6 304 aaKnown RBP10.91□□□□□ -0.66
MCF2-209ENST00000520602 PLAAQ9Y263 795 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 PCDHA2Q9Y5H9 948 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 UBIAD1Q9Y5Z9 338 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 ALG6Q9Y672 507 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 PJA2O43164 708 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 GAS8O95995 478 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 DSG3P32926 999 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 NEDD9Q14511 834 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 SGO2Q562F6 1265 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 IRF2BP2Q7Z5L9 587 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 ARHGEF19Q8IW93 802 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 RNF149Q8NC42 400 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 RBM46Q8TBY0 533 aaKnown RBP10.91□□□□□ -0.66
MCF2-209ENST00000520602 WHAMMQ8TF30 809 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 CPA5Q8WXQ8 436 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 DHX38Q92620 1227 aaKnown RBP10.91□□□□□ -0.66
MCF2-209ENST00000520602 GMLQ99445 158 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 TIPINQ9BVW5 301 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 GTPBP10A4D1E9 387 aaKnown RBP10.91□□□□□ -0.66
MCF2-209ENST00000520602 ANKRD63C9JTQ0 380 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 KRT14P02533 472 aa10.91□□□□□ -0.66
MCF2-209ENST00000520602 GLI1P08151 1106 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms