RNA–Protein interactions for RNA: ENST00000520234.1

HMGB1P41-201, Transcript of high mobility group box 1 pseudogene 41, humanhuman

BASIC

Gene HMGB1P41, Length 440 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P41-201ENST00000520234 LMF1Q96S06 567 aa4.39□□□□□ -1.71
HMGB1P41-201ENST00000520234 SMAD5Q99717 465 aaKnown RBP4.39□□□□□ -1.71
HMGB1P41-201ENST00000520234 NELFAQ9H3P2 528 aa4.39□□□□□ -1.71
HMGB1P41-201ENST00000520234 OAZ3Q9UMX2 235 aa4.39□□□□□ -1.71
HMGB1P41-201ENST00000520234 ZNF536O15090 1300 aa4.39□□□□□ -1.71
HMGB1P41-201ENST00000520234 E2F8A0AVK6 867 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 NRP1O14786 923 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 PCDHGA12O60330 932 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 PHF2O75151 1096 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 ALDH1A2O94788 518 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 S100BP04271 92 aaPredicted RBP4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 CR2P20023 1033 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 RPS19P39019 145 aaKnown RBP4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 RECQLP46063 649 aaPredicted RBP4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 BPIFB4P59827 614 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 ATP2C1P98194 919 aaPredicted RBP4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 MALLQ13021 153 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 TTF1Q15361 905 aaPredicted RBP4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 PCBP2Q15366 365 aaKnown RBP eCLIP4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 TBC1D10BQ4KMP7 808 aaPredicted RBP4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 EFCAB2Q5VUJ9 269 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 GLB1L3Q8NCI6 653 aaPredicted RBP4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 PIK3C3Q8NEB9 887 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 GPR156Q8NFN8 814 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 CFHR4Q92496 578 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 JADE3Q92613 823 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 GREM2Q9H772 168 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 METTL14Q9HCE5 456 aaKnown RBP4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 ING1Q9UK53 422 aaPredicted RBP4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 PCDHGA9Q9Y5G4 932 aaKnown RBP4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 PCDHGA8Q9Y5G5 932 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 PCDHGA7Q9Y5G6 932 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 PCDHGA6Q9Y5G7 932 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 PCDHGA3Q9Y5H0 932 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 PCDHGA2Q9Y5H1 932 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 HS3ST3A1Q9Y663 406 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 RPTORQ8N122 1335 aa4.38□□□□□ -1.71
HMGB1P41-201ENST00000520234 MYO15BQ96JP2 1530 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 NPEPPSL1A6NEC2 478 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 MATN2O00339 956 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 XPOTO43592 962 aaKnown RBP4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 TOX4O94842 621 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 GASTP01350 101 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 OSMP13725 252 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 CTSSP25774 331 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 WASP42768 502 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 UBE3CQ15386 1083 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 TMEM240Q5SV17 173 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 ODR4Q5SWX8 454 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 LRCH2Q5VUJ6 765 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 KRT40Q6A162 431 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 GLB1LQ6UWU2 654 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 ANKRD53Q8N9V6 530 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 SHCBP1Q8NEM2 672 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 SNX33Q8WV41 574 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 CAMKK2Q96RR4 588 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 ADI1Q9BV57 179 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 C12orf65Q9H3J6 166 aaKnown RBP4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 TCF7L1Q9HCS4 588 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 AASDHPPTQ9NRN7 309 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 RBM12Q9NTZ6 932 aaKnown RBP4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 PPP4R1LQ9P1A2 415 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 SAP30BPQ9UHR5 308 aaKnown RBP4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 SCOCQ9UIL1 159 aa4.37□□□□□ -1.71
HMGB1P41-201ENST00000520234 CDC14BO60729 498 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 PRAMEF4O60810 478 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 TMEM127O75204 238 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 NDUFS2O75306 463 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 HMGB1P09429 215 aaKnown RBP4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 GYPEP15421 78 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 VCAM1P19320 739 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 MCAMP43121 646 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 SLC16A1P53985 500 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 ADAM8P78325 824 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 MCL1Q07820 350 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 TAX1BP1Q86VP1 789 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 CIR1Q86X95 450 aaPredicted RBP4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 CMTM4Q8IZR5 234 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 HOOK2Q96ED9 719 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 TEKT5Q96M29 485 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 LRRC37BQ96QE4 947 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 DPYSL5Q9BPU6 564 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 MEGF9Q9H1U4 602 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 LUC7L2Q9Y383 392 aaKnown RBP4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 DCAF1Q9Y4B6 1507 aa4.36□□□□□ -1.71
HMGB1P41-201ENST00000520234 FAM171A2A8MVW0 826 aa4.35□□□□□ -1.71
HMGB1P41-201ENST00000520234 HSP90B1P14625 803 aaKnown RBP4.35□□□□□ -1.71
HMGB1P41-201ENST00000520234 GSPT1P15170 499 aaKnown RBP4.35□□□□□ -1.71
HMGB1P41-201ENST00000520234 CRHR1P34998 444 aa4.35□□□□□ -1.71
HMGB1P41-201ENST00000520234 ADKP55263 362 aaKnown RBP4.35□□□□□ -1.71
HMGB1P41-201ENST00000520234 NPEPPSP55786 919 aa4.35□□□□□ -1.71
HMGB1P41-201ENST00000520234 CCT2P78371 535 aaKnown RBP4.35□□□□□ -1.71
HMGB1P41-201ENST00000520234 DUSP2Q05923 314 aa4.35□□□□□ -1.71
HMGB1P41-201ENST00000520234 MGAT2Q10469 447 aa4.35□□□□□ -1.71
HMGB1P41-201ENST00000520234 PIN1Q13526 163 aaPredicted RBP4.35□□□□□ -1.71
HMGB1P41-201ENST00000520234 RIN1Q13671 783 aa4.35□□□□□ -1.71
HMGB1P41-201ENST00000520234 CDSNQ15517 529 aa4.35□□□□□ -1.71
HMGB1P41-201ENST00000520234 ABHD15Q6UXT9 468 aa4.35□□□□□ -1.71
HMGB1P41-201ENST00000520234 THEMISQ8N1K5 641 aaPredicted RBP4.35□□□□□ -1.71
HMGB1P41-201ENST00000520234 CPA6Q8N4T0 437 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms