RNA–Protein interactions for RNA: ENST00000518569.1

VPS13B-207, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 3

Gene VPS13B, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-207ENST00000518569 TUBD1Q9UJT1 453 aa4.9□□□□□ -1.63
VPS13B-207ENST00000518569 CNOT11Q9UKZ1 510 aaKnown RBP4.9□□□□□ -1.63
VPS13B-207ENST00000518569 ANKRD6Q9Y2G4 727 aa4.9□□□□□ -1.63
VPS13B-207ENST00000518569 GIT1Q9Y2X7 761 aa4.9□□□□□ -1.63
VPS13B-207ENST00000518569 ZNF536O15090 1300 aa4.9□□□□□ -1.63
VPS13B-207ENST00000518569 FAM171A2A8MVW0 826 aa4.89□□□□□ -1.63
VPS13B-207ENST00000518569 AKAP10O43572 662 aa4.89□□□□□ -1.63
VPS13B-207ENST00000518569 PRAMEF4O60810 478 aa4.89□□□□□ -1.63
VPS13B-207ENST00000518569 RFPL1O75677 317 aa4.89□□□□□ -1.63
VPS13B-207ENST00000518569 GYPEP15421 78 aa4.89□□□□□ -1.63
VPS13B-207ENST00000518569 CRHR1P34998 444 aa4.89□□□□□ -1.63
VPS13B-207ENST00000518569 RIN1Q13671 783 aa4.89□□□□□ -1.63
VPS13B-207ENST00000518569 NFE2Q16621 373 aaPredicted RBP4.89□□□□□ -1.63
VPS13B-207ENST00000518569 MST1LQ2TV78 715 aa4.89□□□□□ -1.63
VPS13B-207ENST00000518569 TAX1BP1Q86VP1 789 aa4.89□□□□□ -1.63
VPS13B-207ENST00000518569 THEMISQ8N1K5 641 aaPredicted RBP4.89□□□□□ -1.63
VPS13B-207ENST00000518569 MSL3Q8N5Y2 521 aaKnown RBP4.89□□□□□ -1.63
VPS13B-207ENST00000518569 CXorf38Q8TB03 319 aa4.89□□□□□ -1.63
VPS13B-207ENST00000518569 RPL10LQ96L21 214 aaKnown RBP4.89□□□□□ -1.63
VPS13B-207ENST00000518569 SSBP3Q9BWW4 388 aaPredicted RBP4.89□□□□□ -1.63
VPS13B-207ENST00000518569 ENKD1Q9H0I2 346 aa4.89□□□□□ -1.63
VPS13B-207ENST00000518569 CDH19Q9H159 772 aa4.89□□□□□ -1.63
VPS13B-207ENST00000518569 C12orf65Q9H3J6 166 aaKnown RBP4.89□□□□□ -1.63
VPS13B-207ENST00000518569 LUC7L2Q9Y383 392 aaKnown RBP4.89□□□□□ -1.63
VPS13B-207ENST00000518569 AKR1B10O60218 316 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 CDC14BO60729 498 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 ENDOD1O94919 500 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 ZRANB2O95218 330 aaKnown RBP eCLIP4.88□□□□□ -1.63
VPS13B-207ENST00000518569 ITGB3P05106 788 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 GSPT1P15170 499 aaKnown RBP4.88□□□□□ -1.63
VPS13B-207ENST00000518569 AKAP5P24588 427 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 RAB27AP51159 221 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 DUSP2Q05923 314 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 GLB1LQ6UWU2 654 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 PRRT2Q7Z6L0 340 aaPredicted RBP4.88□□□□□ -1.63
VPS13B-207ENST00000518569 CIR1Q86X95 450 aaPredicted RBP4.88□□□□□ -1.63
VPS13B-207ENST00000518569 GPR135Q8IZ08 494 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 ZNF480Q8WV37 535 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 JDP2Q8WYK2 163 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 HOXB13Q92826 284 aaPredicted RBP4.88□□□□□ -1.63
VPS13B-207ENST00000518569 COA7Q96BR5 231 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 HSPBAP1Q96EW2 488 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 BORCS6Q96GS4 357 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 LRRC37BQ96QE4 947 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 RBM15Q96T37 977 aaKnown RBP eCLIP4.88□□□□□ -1.63
VPS13B-207ENST00000518569 PTPN18Q99952 460 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 DPYSL5Q9BPU6 564 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 CSRNP2Q9H175 543 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 BCO1Q9HAY6 547 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 IL23AQ9NPF7 189 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 TLR9Q9NR96 1032 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 GPRC5DQ9NZD1 345 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 TCEAL9Q9UHQ7 104 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 RCAN3Q9UKA8 241 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 PNMA8BQ9ULN7 279 aaPredicted RBP4.88□□□□□ -1.63
VPS13B-207ENST00000518569 SLC30A1Q9Y6M5 507 aa4.88□□□□□ -1.63
VPS13B-207ENST00000518569 A0A1W2PRX2 142 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 GPR42O15529 346 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 RAD17O75943 681 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 ZSCAN20P17040 1043 aaPredicted RBP4.87□□□□□ -1.63
VPS13B-207ENST00000518569 ECHS1P30084 290 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 NPEPPSP55786 919 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 SAFB2Q14151 953 aaKnown RBP eCLIP4.87□□□□□ -1.63
VPS13B-207ENST00000518569 PDZD4Q76G19 769 aaPredicted RBP4.87□□□□□ -1.63
VPS13B-207ENST00000518569 MIER2Q8N344 545 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 LILRA3Q8N6C8 439 aaPredicted RBP4.87□□□□□ -1.63
VPS13B-207ENST00000518569 PPM1NQ8N819 430 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 GIMAP8Q8ND71 665 aaPredicted RBP4.87□□□□□ -1.63
VPS13B-207ENST00000518569 OR7D4Q8NG98 312 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.87□□□□□ -1.63
VPS13B-207ENST00000518569 NRG4Q8WWG1 115 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 CYFIP2Q96F07 1278 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 MPHOSPH9Q99550 1183 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 TCF25Q9BQ70 676 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 PLA2G12BQ9BX93 195 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 RHOBTB2Q9BYZ6 727 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 AGO3Q9H9G7 860 aaKnown RBP4.87□□□□□ -1.63
VPS13B-207ENST00000518569 TRPS1Q9UHF7 1281 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 IP6K2Q9UHH9 426 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 ZNF180Q9UJW8 692 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 DNM3Q9UQ16 869 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 EID1Q9Y6B2 187 aa4.87□□□□□ -1.63
VPS13B-207ENST00000518569 UBE2QL1A1L167 161 aa4.86□□□□□ -1.63
VPS13B-207ENST00000518569 U2AF1L5P0DN76 240 aaPredicted RBP4.86□□□□□ -1.63
VPS13B-207ENST00000518569 ADSLP30566 484 aaPredicted RBP4.86□□□□□ -1.63
VPS13B-207ENST00000518569 GZMKP49863 264 aa4.86□□□□□ -1.63
VPS13B-207ENST00000518569 U2AF1Q01081 240 aaKnown RBP eCLIP4.86□□□□□ -1.63
VPS13B-207ENST00000518569 KIF23Q02241 960 aaPredicted RBP4.86□□□□□ -1.63
VPS13B-207ENST00000518569 GRM7Q14831 915 aa4.86□□□□□ -1.63
VPS13B-207ENST00000518569 ACAP1Q15027 740 aa4.86□□□□□ -1.63
VPS13B-207ENST00000518569 NOMO1Q15155 1222 aa4.86□□□□□ -1.63
VPS13B-207ENST00000518569 TCTN3Q6NUS6 607 aa4.86□□□□□ -1.63
VPS13B-207ENST00000518569 Q6ZVL8 140 aa4.86□□□□□ -1.63
VPS13B-207ENST00000518569 DNERQ8NFT8 737 aa4.86□□□□□ -1.63
VPS13B-207ENST00000518569 JPH3Q8WXH2 748 aaPredicted RBP4.86□□□□□ -1.63
VPS13B-207ENST00000518569 HDAC10Q969S8 669 aa4.86□□□□□ -1.63
VPS13B-207ENST00000518569 RTFDC1Q9BY42 306 aaPredicted RBP4.86□□□□□ -1.63
VPS13B-207ENST00000518569 MANSC1Q9H8J5 431 aa4.86□□□□□ -1.63
VPS13B-207ENST00000518569 DMRT3Q9NQL9 472 aa4.86□□□□□ -1.63
VPS13B-207ENST00000518569 PLA2G3Q9NZ20 509 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms