RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 CCDC122Q5T0U0 273 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 UBAP2Q5T6F2 1119 aaKnown RBP8.04□□□□□ -1.12
CLIP1-205ENST00000514271 RHBDF2Q6PJF5 856 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 SND1Q7KZF4 910 aaKnown RBP eCLIP8.04□□□□□ -1.12
CLIP1-205ENST00000514271 MICU3Q86XE3 530 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 CUL5Q93034 780 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 ATG4CQ96DT6 458 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 AK8Q96MA6 479 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 IWS1Q96ST2 819 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 ZMYND12Q9H0C1 365 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 ANK1P16157 1881 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 TRAFD1O14545 582 aaPredicted RBP8.04□□□□□ -1.12
CLIP1-205ENST00000514271 ABLIM1O14639 778 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 OPLAHO14841 1288 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 SEC24CP53992 1094 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 BNIP1Q12981 228 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 AP3B2Q13367 1082 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 TMEM63BQ5T3F8 832 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 RELL1Q8IUW5 271 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 TRIM59Q8IWR1 403 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 ZNF276Q8N554 614 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 ANKRD20A12PQ8NF67 263 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 ZNF296Q8WUU4 475 aaPredicted RBP8.04□□□□□ -1.12
CLIP1-205ENST00000514271 CD101Q93033 1021 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 MMP19Q99542 508 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 VPS16Q9H269 839 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 LUC7L2Q9Y383 392 aaKnown RBP8.04□□□□□ -1.12
CLIP1-205ENST00000514271 GMNCA6NCL1 334 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 MAGEB2O15479 319 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 MOCS3O95396 460 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 CALML3P27482 149 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 PPP1R2P41236 205 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 SKIV2L2P42285 1042 aaKnown RBP8.04□□□□□ -1.12
CLIP1-205ENST00000514271 USP11P51784 963 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 CUL1Q13616 776 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 ACVR2BQ13705 512 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 SGSM1Q2NKQ1 1148 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 MFSD14CQ5VZR4 134 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 GPR142Q7Z601 462 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 ARMC5Q96C12 935 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 PBKQ96KB5 322 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 CTNNAL1Q9UBT7 734 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 CCPG1Q9ULG6 757 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 CORO1CQ9ULV4 474 aaPredicted RBP8.04□□□□□ -1.12
CLIP1-205ENST00000514271 GUCA1BQ9UMX6 200 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 PTPN22Q9Y2R2 807 aa8.04□□□□□ -1.12
CLIP1-205ENST00000514271 PVALEFA0A1B0GWK0 134 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 SART1O43290 800 aaKnown RBP8.03□□□□□ -1.12
CLIP1-205ENST00000514271 PSMC4P43686 418 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 STX17P56962 302 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 UBXN1Q04323 297 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 IFFO1Q0D2I5 559 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 BLMHQ13867 455 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 TMEM132BQ14DG7 1078 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 ZYXQ15942 572 aaKnown RBP8.03□□□□□ -1.12
CLIP1-205ENST00000514271 MAMDC4Q6UXC1 1216 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 SPOCK2Q92563 424 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 MS4A14Q96JA4 679 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 BLZF1Q9H2G9 400 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 INTUQ9ULD6 942 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 NFASCO94856 1347 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 COBLO75128 1261 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 GNA11P29992 359 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 SNRNP48Q6IEG0 339 aaKnown RBP8.03□□□□□ -1.12
CLIP1-205ENST00000514271 RGS9BPQ6ZS82 235 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 EP400NLQ6ZTU2 488 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 BZW1Q7L1Q6 419 aaKnown RBP8.03□□□□□ -1.12
CLIP1-205ENST00000514271 ADGRF4Q8IZF3 695 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 GUF1Q8N442 669 aaKnown RBP8.03□□□□□ -1.12
CLIP1-205ENST00000514271 ANKRD13CQ8N6S4 541 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 ZFAND2BQ8WV99 257 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 ZIC5Q96T25 663 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 JMJD4Q9H9V9 463 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 HOMER3Q9NSC5 361 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 CPA4Q9UI42 421 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 PCDHA4Q9UN74 947 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 SAMM50Q9Y512 469 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 COMMD10Q9Y6G5 202 aa8.03□□□□□ -1.12
CLIP1-205ENST00000514271 DNAJC25-GNG10A0A024R161 153 aa8.02□□□□□ -1.12
CLIP1-205ENST00000514271 CPLX1O14810 134 aa8.02□□□□□ -1.12
CLIP1-205ENST00000514271 NMT2O60551 498 aa8.02□□□□□ -1.12
CLIP1-205ENST00000514271 HMGCRP04035 888 aa8.02□□□□□ -1.12
CLIP1-205ENST00000514271 FESP07332 822 aa8.02□□□□□ -1.12
CLIP1-205ENST00000514271 CYP2C8P10632 490 aa8.02□□□□□ -1.12
CLIP1-205ENST00000514271 CCNHP51946 323 aaPredicted RBP8.02□□□□□ -1.12
CLIP1-205ENST00000514271 SLMAPQ14BN4 828 aa8.02□□□□□ -1.12
CLIP1-205ENST00000514271 SLC18A3Q16572 532 aa8.02□□□□□ -1.12
CLIP1-205ENST00000514271 BMT2Q1RMZ1 405 aa8.02□□□□□ -1.12
CLIP1-205ENST00000514271 PDILTQ8N807 584 aa8.02□□□□□ -1.12
CLIP1-205ENST00000514271 C12orf50Q8NA57 414 aaPredicted RBP8.02□□□□□ -1.12
CLIP1-205ENST00000514271 CNOT6LQ96LI5 555 aaKnown RBP8.02□□□□□ -1.12
CLIP1-205ENST00000514271 RNF146Q9NTX7 359 aa8.02□□□□□ -1.12
CLIP1-205ENST00000514271 BTBD7Q9P203 1132 aa8.02□□□□□ -1.12
CLIP1-205ENST00000514271 CEP72Q9P209 647 aa8.02□□□□□ -1.12
CLIP1-205ENST00000514271 C15orf41Q9Y2V0 281 aa8.02□□□□□ -1.12
CLIP1-205ENST00000514271 Q9Y3F1 56 aa8.02□□□□□ -1.12
CLIP1-205ENST00000514271 CAPN7Q9Y6W3 813 aa8.02□□□□□ -1.12
CLIP1-205ENST00000514271 LRRC53A6NM62 1247 aa8.02□□□□□ -1.13
CLIP1-205ENST00000514271 N4BP3O15049 544 aa8.02□□□□□ -1.13
CLIP1-205ENST00000514271 NCALDP61601 193 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms