RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 UHMK1Q8TAS1 419 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 AFAP1L1Q8TED9 768 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 FAM20AQ96MK3 541 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 MAF1Q9H063 256 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 TTYH1Q9H313 450 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 FOXP1Q9H334 677 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 MTMR6Q9Y217 621 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 TRPV2Q9Y5S1 764 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 TTLL13PA6NNM8 815 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 I3L4J1 428 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 GTPBP6O43824 516 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 AMHP03971 560 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 KCNA5P22460 613 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 SFNP31947 248 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 OR1G1P47890 313 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 LAMTOR4Q0VGL1 99 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 SNX17Q15036 470 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 TXLNBQ8N3L3 684 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 KLHL23Q8NBE8 558 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 SYMPKQ92797 1274 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 TRIM11Q96F44 468 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 C16orf45Q96MC5 204 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 JPH2Q9BR39 696 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 GCOM2Q9BZD3 368 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 CEP131Q9UPN4 1083 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 STK36Q9NRP7 1315 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 CASTOR2A6NHX0 329 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 TISP43B9A030 160 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 FAM13AO94988 1023 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 GCFC2P16383 781 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 PLCG1P19174 1290 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 STAT6P42226 847 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 USP4Q13107 963 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 EPHA7Q15375 998 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 FBXO47Q5MNV8 452 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 PLPP4Q5VZY2 271 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 TMC7Q7Z402 723 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 CAGE1Q8TC20 777 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 ASAP3Q8TDY4 903 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 SPATA32Q96LK8 384 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 RNF39Q9H2S5 420 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 PCIF1Q9H4Z3 704 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 RABL2BQ9UNT1 228 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 ZNF232Q9UNY5 417 aa8.63□□□□□ -1.03
LIMCH1-219ENST00000514096 GOLGA8IPA6NC78 632 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 GOLGA8JA6NMD2 632 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 F8W810 466 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 KINO60870 393 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 SKAP2O75563 359 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 NPTXRO95502 500 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 C22orf31O95567 290 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 CYP3A4P08684 503 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 TXLNAP40222 546 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 NCBP1Q09161 790 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 IL17AQ16552 155 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 ODR4Q5SWX8 454 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 RRAGBQ5VZM2 374 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 FAM228AQ86W67 206 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 SYCP3Q8IZU3 236 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 PHC3Q8NDX5 983 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 ZBTB45Q96K62 511 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 GAD1Q99259 594 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 RUSC1Q9BVN2 902 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 VAV3Q9UKW4 847 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 FRMD4BQ9Y2L6 1034 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 CCDC189A1A4V9 331 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 BIN1O00499 593 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 TBCAO75347 108 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 NAT1P18440 290 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 HSP90AA4PQ58FG1 418 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 HAUS3Q68CZ6 603 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 HOOK3Q86VS8 718 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 IFT74Q96LB3 600 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 EIF2AQ9BY44 585 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 SEMA6BQ9H3T3 888 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 ATP6V0A4Q9HBG4 840 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 TYW1Q9NV66 732 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 VPS13AQ96RL7 3174 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 F5P12259 2224 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 POLR2DO15514 142 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 RARRES1P49788 294 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 GPNMBQ14956 572 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 CAMK4Q16566 473 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 ZC2HC1CQ53FD0 456 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 LMBRD2Q68DH5 695 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 KIAA1841Q6NSI8 718 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 FMNL3Q8IVF7 1028 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 FIBCD1Q8N539 461 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 FAM167AQ96KS9 214 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 PPP1R9BQ96SB3 815 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 TARS2Q9BW92 718 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 GOLGA2P5Q9HBQ8 144 aa8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 CHCHD3Q9NX63 227 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-219ENST00000514096 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 EPOPA6NHQ4 379 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 ENO4A6NNW6 628 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 K7ERI5 159 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 SPTLC2O15270 562 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 HIP1RO75146 1068 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 NMT1P30419 496 aaKnown RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms