RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 KANSL3Q9P2N6 904 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 GIT1Q9Y2X7 761 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 RBM19Q9Y4C8 960 aaKnown RBP10.72□□□□□ -0.69
RNF4-221ENST00000513643 PCDHB12Q9Y5F1 795 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 NLRC5Q86WI3 1866 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 A0A087X0B3 334 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 CARNS1A5YM72 827 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 ARL5CA6NH57 179 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 SFI1A8K8P3 1242 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 DDHD2O94830 711 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 YEATS4O95619 227 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 BRD1O95696 1058 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 PRKCBP05771 671 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 BMP1P13497 986 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 LTBRP36941 435 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 PEX3P56589 373 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 BCAR1P56945 870 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 ERVFC1P60507 584 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 HYAL1Q12794 435 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 PRPF4BQ13523 1007 aaKnown RBP10.71□□□□□ -0.69
RNF4-221ENST00000513643 KCNC3Q14003 757 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 GIT2Q14161 759 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 SPECC1Q5M775 1068 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 AXDND1Q5T1B0 1012 aaPredicted RBP10.71□□□□□ -0.69
RNF4-221ENST00000513643 EEF1DP3Q658K8 133 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 ATL3Q6DD88 541 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 TMEM173Q86WV6 379 aaPredicted RBP10.71□□□□□ -0.69
RNF4-221ENST00000513643 ABI1Q8IZP0 508 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 KRI1Q8N9T8 703 aaKnown RBP10.71□□□□□ -0.69
RNF4-221ENST00000513643 RNF169Q8NCN4 708 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 DEPTORQ8TB45 409 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 MRPS27Q92552 414 aaKnown RBP10.71□□□□□ -0.69
RNF4-221ENST00000513643 HLA-CQ95604 372 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 CALML4Q96GE6 196 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 ACO2Q99798 780 aaKnown RBP10.71□□□□□ -0.69
RNF4-221ENST00000513643 NXF3Q9H4D5 531 aaKnown RBP10.71□□□□□ -0.69
RNF4-221ENST00000513643 C5orf42Q9H799 3197 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 THEGQ9P2T0 379 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 KCNG1Q9UIX4 513 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 ODF2LQ9ULJ1 636 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 TNFSF13BQ9Y275 285 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 USP20Q9Y2K6 914 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 HES2Q9Y543 173 aa10.71□□□□□ -0.69
RNF4-221ENST00000513643 KIAA1671Q9BY89 1806 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 PHLPP2Q6ZVD8 1323 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 NPHP3-ACAD11A0A0J9YXS1 232 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 K7ERI5 159 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 N4BP3O15049 544 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 NCK2O43639 380 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 MAPTP10636 758 aaKnown RBP10.7□□□□□ -0.7
RNF4-221ENST00000513643 ITGA4P13612 1032 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 PPM1AP35813 382 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 PBX3P40426 434 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 SLC11A1P49279 550 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 NCKAP1LP55160 1127 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 MRPS5P82675 430 aaKnown RBP10.7□□□□□ -0.7
RNF4-221ENST00000513643 CEBPZQ03701 1054 aaKnown RBP10.7□□□□□ -0.7
RNF4-221ENST00000513643 DMP1Q13316 513 aaPredicted RBP10.7□□□□□ -0.7
RNF4-221ENST00000513643 MCM6Q14566 821 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 ZRSR1Q15695 479 aaKnown RBP10.7□□□□□ -0.7
RNF4-221ENST00000513643 NAB2Q15742 525 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 LONRF3Q496Y0 759 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 XKR4Q5GH76 650 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 PDE12Q6L8Q7 609 aaKnown RBP10.7□□□□□ -0.7
RNF4-221ENST00000513643 ALKAL1Q6UXT8 129 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 CDR2LQ86X02 465 aaPredicted RBP10.7□□□□□ -0.7
RNF4-221ENST00000513643 COLGALT2Q8IYK4 626 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 RNF168Q8IYW5 571 aaPredicted RBP10.7□□□□□ -0.7
RNF4-221ENST00000513643 BCL7CQ8WUZ0 217 aaPredicted RBP10.7□□□□□ -0.7
RNF4-221ENST00000513643 PABPC5Q96DU9 382 aaKnown RBP10.7□□□□□ -0.7
RNF4-221ENST00000513643 ZNF396Q96N95 335 aaPredicted RBP10.7□□□□□ -0.7
RNF4-221ENST00000513643 ZNF558Q96NG5 402 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 GAD1Q99259 594 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 REEP2Q9BRK0 252 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 TMEM175Q9BSA9 504 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 STRA6Q9BX79 667 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 VN1R3Q9BXE9 311 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 ST6GALNAC4Q9H4F1 302 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 SPG21Q9NZD8 308 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 TFIP11Q9UBB9 837 aaKnown RBP10.7□□□□□ -0.7
RNF4-221ENST00000513643 DNAJB4Q9UDY4 337 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 STK17AQ9UEE5 414 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 RCOR1Q9UKL0 485 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 IRAK3Q9Y616 596 aa10.7□□□□□ -0.7
RNF4-221ENST00000513643 ATG2AQ2TAZ0 1938 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 SPTLC2O15270 562 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 MEFVO15553 781 aaPredicted RBP10.69□□□□□ -0.7
RNF4-221ENST00000513643 LILRB3O75022 631 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 NPTXRO95502 500 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 PIGRP01833 764 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 IBSPP21815 317 aaPredicted RBP10.69□□□□□ -0.7
RNF4-221ENST00000513643 SCP2P22307 547 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 ALDH7A1P49419 539 aaKnown RBP10.69□□□□□ -0.7
RNF4-221ENST00000513643 TFF2Q03403 129 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 ADAM15Q13444 863 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 E2F4Q16254 413 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 LEXMQ3ZCV2 418 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 TJAP1Q5JTD0 557 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 ATF7IP2Q5U623 682 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 SHC4Q6S5L8 630 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms