RNA–Protein interactions for RNA: ENST00000512040.1

MATR3-219, Transcript of matrin 3, human

TSL 3

Gene MATR3, Length 642 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-219	ENST00000512040	RNF186	Q9NXI6	227 aa		4.88	□□□□□ -1.63
MATR3-219	ENST00000512040	MTRR	Q9UBK8	725 aa		4.88	□□□□□ -1.63
MATR3-219	ENST00000512040	STK39	Q9UEW8	545 aa		4.88	□□□□□ -1.63
MATR3-219	ENST00000512040	ZC3H7B	Q9UGR2	993 aa	Known RBP	4.88	□□□□□ -1.63
MATR3-219	ENST00000512040	ITGB1BP2	Q9UKP3	347 aa		4.88	□□□□□ -1.63
MATR3-219	ENST00000512040	ZNRF3	Q9ULT6	936 aa		4.88	□□□□□ -1.63
MATR3-219	ENST00000512040	ATP11B	Q9Y2G3	1177 aa		4.88	□□□□□ -1.63
MATR3-219	ENST00000512040	FNDC3A	Q9Y2H6	1198 aa	Known RBP	4.88	□□□□□ -1.63
MATR3-219	ENST00000512040	GAK	O14976	1311 aa		4.88	□□□□□ -1.63
MATR3-219	ENST00000512040	ZNF609	O15014	1411 aa		4.88	□□□□□ -1.63
MATR3-219	ENST00000512040	CLRN2	A0PK11	232 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	SYNDIG1L	A6NDD5	238 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	VSTM5	A8MXK1	200 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	EIF3F	O00303	357 aa	Predicted RBP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	ELL2	O00472	640 aa	Predicted RBP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	DYNC1I1	O14576	645 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	IRS4	O14654	1257 aa	Predicted RBP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	AREL1	O15033	823 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	NCAM2	O15394	837 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	FOXD2	O60548	495 aa	Predicted RBP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	PDE8A	O60658	829 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	DKC1	O60832	514 aa	Known RBP eCLIP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	TSC22D2	O75157	780 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	TRPA1	O75762	1119 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	USP1	O94782	785 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	GFPT2	O94808	682 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	S100A6	P06703	90 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	IFIT1	P09914	478 aa	Known RBP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	RARA	P10276	462 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	NFKB1	P19838	968 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	XPA	P23025	273 aa	Predicted RBP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	TARS	P26639	723 aa	Known RBP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	TMOD1	P28289	359 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	CSTF2	P33240	577 aa	Known RBP eCLIP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	SOX5	P35711	763 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	CCT8	P50990	548 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	RPS6KA3	P51812	740 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	NFKB2	Q00653	900 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	GABPB1	Q06547	395 aa	Predicted RBP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	APOBR	Q0VD83	1088 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	GBX1	Q14549	363 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	SAFB	Q15424	915 aa	Known RBP eCLIP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	OASL	Q15646	514 aa	Known RBP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	INA	Q16352	499 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	SUPT20HL1	Q3ZLR7	823 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	C2orf27A	Q580R0	203 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	KIAA0319	Q5VV43	1072 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	C1orf228	Q6PIY5	440 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	ANGPTL8	Q6UXH0	198 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	LDHAL6A	Q6ZMR3	332 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	HS2ST1	Q7LGA3	356 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	CCDC186	Q7Z3E2	898 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	ZNF438	Q7Z4V0	828 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	NECAB2	Q7Z6G3	386 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	SPATA2L	Q8IUW3	424 aa	Predicted RBP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	PASD1	Q8IV76	773 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	TBC1D21	Q8IYX1	336 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	SLC7A5P1	Q8MH63	180 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	GJD3	Q8N144	294 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	VPS52	Q8N1B4	723 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	C8orf58	Q8NAV2	365 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	TRIM58	Q8NG06	486 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	FBXO30	Q8TB52	745 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	MGARP	Q8TDB4	240 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	PARD3B	Q8TEW8	1205 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	CELF1	Q92879	486 aa	Known RBP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	FAM89A	Q96GI7	184 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	CITED4	Q96RK1	184 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	MYD88	Q99836	296 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	EIF2AK1	Q9BQI3	630 aa	Known RBP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	ADPGK	Q9BRR6	497 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	METTL22	Q9BUU2	404 aa	Predicted RBP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	KRTAP9-8	Q9BYQ0	159 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	IGFLR1	Q9H665	355 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	BRD9	Q9H8M2	597 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	HPF1	Q9NWY4	346 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	IL1RAPL1	Q9NZN1	696 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	POLL	Q9UGP5	575 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	CNOT7	Q9UIV1	285 aa	Known RBP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	PHTF1	Q9UMS5	762 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	NSFL1C	Q9UNZ2	370 aa	Known RBP	4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	MAP3K2	Q9Y2U5	619 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	TRIOBP	Q9H2D6	2365 aa		4.87	□□□□□ -1.63
MATR3-219	ENST00000512040	ARAP2	Q8WZ64	1704 aa		4.86	□□□□□ -1.63
MATR3-219	ENST00000512040	CUL9	Q8IWT3	2517 aa		4.86	□□□□□ -1.63
MATR3-219	ENST00000512040	PI4KAP2	A4QPH2	592 aa		4.86	□□□□□ -1.63
MATR3-219	ENST00000512040		A8MVJ9	347 aa		4.86	□□□□□ -1.63
MATR3-219	ENST00000512040	TLR5	O60602	858 aa		4.86	□□□□□ -1.63
MATR3-219	ENST00000512040	DIAPH2	O60879	1101 aa		4.86	□□□□□ -1.63
MATR3-219	ENST00000512040	PALM	O75781	387 aa		4.86	□□□□□ -1.63
MATR3-219	ENST00000512040	ABLIM3	O94929	683 aa		4.86	□□□□□ -1.63
MATR3-219	ENST00000512040	SLITRK3	O94933	977 aa		4.86	□□□□□ -1.63
MATR3-219	ENST00000512040	SNX4	O95219	450 aa		4.86	□□□□□ -1.63
MATR3-219	ENST00000512040	RPLP1	P05386	114 aa	Known RBP	4.86	□□□□□ -1.63
MATR3-219	ENST00000512040	PGR	P06401	933 aa		4.86	□□□□□ -1.63
MATR3-219	ENST00000512040	PSMA4	P25789	261 aa	Known RBP	4.86	□□□□□ -1.63
MATR3-219	ENST00000512040	HSD17B2	P37059	387 aa		4.86	□□□□□ -1.63
MATR3-219	ENST00000512040	CENPA	P49450	140 aa		4.86	□□□□□ -1.63
MATR3-219	ENST00000512040	PCBP4	P57723	403 aa	Known RBP	4.86	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms