RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 FAM189BP81408 668 aa4.34□□□□□ -1.71
NUP54-208ENST00000508604 CD69Q07108 199 aa4.34□□□□□ -1.71
NUP54-208ENST00000508604 EPHA10Q5JZY3 1008 aa4.34□□□□□ -1.71
NUP54-208ENST00000508604 COLEC12Q5KU26 742 aa4.34□□□□□ -1.71
NUP54-208ENST00000508604 PIK3C3Q8NEB9 887 aa4.34□□□□□ -1.71
NUP54-208ENST00000508604 CAGE1Q8TC20 777 aa4.34□□□□□ -1.71
NUP54-208ENST00000508604 RTF1Q92541 710 aaKnown RBP4.34□□□□□ -1.71
NUP54-208ENST00000508604 MKL1Q969V6 931 aa4.34□□□□□ -1.71
NUP54-208ENST00000508604 SOX7Q9BT81 388 aa4.34□□□□□ -1.71
NUP54-208ENST00000508604 PODXL2Q9NZ53 605 aa4.34□□□□□ -1.71
NUP54-208ENST00000508604 RNASE9P60153 205 aaKnown RBP4.33□□□□□ -1.72
NUP54-208ENST00000508604 NHLH2Q02577 135 aa4.33□□□□□ -1.72
NUP54-208ENST00000508604 ABHD17BQ5VST6 288 aa4.33□□□□□ -1.72
NUP54-208ENST00000508604 ESRP1Q6NXG1 681 aaKnown RBP4.33□□□□□ -1.72
NUP54-208ENST00000508604 LMBR1LQ6UX01 489 aa4.33□□□□□ -1.72
NUP54-208ENST00000508604 UNQ6494/PRO21346Q6UXR6 183 aa4.33□□□□□ -1.72
NUP54-208ENST00000508604 ESPNLQ6ZVH7 1005 aa4.33□□□□□ -1.72
NUP54-208ENST00000508604 TAS1R1Q7RTX1 841 aa4.33□□□□□ -1.72
NUP54-208ENST00000508604 CPEB3Q8NE35 698 aaKnown RBP4.33□□□□□ -1.72
NUP54-208ENST00000508604 PPP1R14CQ8TAE6 165 aa4.33□□□□□ -1.72
NUP54-208ENST00000508604 SPATA5L1Q9BVQ7 753 aa4.33□□□□□ -1.72
NUP54-208ENST00000508604 LSM14BQ9BX40 385 aaKnown RBP4.33□□□□□ -1.72
NUP54-208ENST00000508604 IFT57Q9NWB7 429 aa4.33□□□□□ -1.72
NUP54-208ENST00000508604 RNF181Q9P0P0 153 aa4.33□□□□□ -1.72
NUP54-208ENST00000508604 POGKQ9P215 609 aa4.33□□□□□ -1.72
NUP54-208ENST00000508604 PIPSLA2A3N6 862 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 CBX4O00257 560 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 LY86O95711 162 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 ERBB2P04626 1255 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 RBP3P10745 1247 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 DDX6P26196 483 aaKnown RBP eCLIP4.32□□□□□ -1.72
NUP54-208ENST00000508604 RBM25P49756 843 aaKnown RBP4.32□□□□□ -1.72
NUP54-208ENST00000508604 SEC24CP53992 1094 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 BEAN1Q3B7T3 259 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 CFAP100Q494V2 611 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 PRR16Q569H4 304 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 ARMC6Q6NXE6 501 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 XYLT1Q86Y38 959 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 LINC00476Q8WZB0 136 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 CDC5LQ99459 802 aaKnown RBP4.32□□□□□ -1.72
NUP54-208ENST00000508604 R3HDMLQ9H3Y0 253 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 INTS7Q9NVH2 962 aaKnown RBP4.32□□□□□ -1.72
NUP54-208ENST00000508604 SYBUQ9NX95 663 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 USP18Q9UMW8 372 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 EPN1Q9Y6I3 576 aaPredicted RBP4.32□□□□□ -1.72
NUP54-208ENST00000508604 INO80B-WBP1J3KQ70 363 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 LEFTY2O00292 366 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 GAS7O60861 476 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 CFBP00751 764 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 JMJD7P0C870 316 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 GPR15P49685 360 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 APBA1Q02410 837 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 CCDC178Q5BJE1 867 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 CDCA2Q69YH5 1023 aaPredicted RBP4.32□□□□□ -1.72
NUP54-208ENST00000508604 EFCAB12Q6NXP0 572 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 DRICH1Q6PGQ1 229 aaPredicted RBP4.32□□□□□ -1.72
NUP54-208ENST00000508604 GLCCI1Q86VQ1 547 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 BOLLQ8N9W6 283 aaKnown RBP4.32□□□□□ -1.72
NUP54-208ENST00000508604 OR10H5Q8NGA6 315 aa4.32□□□□□ -1.72
NUP54-208ENST00000508604 INO80BQ9C086 356 aaPredicted RBP4.32□□□□□ -1.72
NUP54-208ENST00000508604 B5MCH6 92 aa4.31□□□□□ -1.72
NUP54-208ENST00000508604 CLEC2LP0C7M8 214 aa4.31□□□□□ -1.72
NUP54-208ENST00000508604 KRTAP10-11P60412 298 aa4.31□□□□□ -1.72
NUP54-208ENST00000508604 RBL2Q08999 1139 aa4.31□□□□□ -1.72
NUP54-208ENST00000508604 MPP3Q13368 585 aa4.31□□□□□ -1.72
NUP54-208ENST00000508604 ZNF460Q14592 562 aa4.31□□□□□ -1.72
NUP54-208ENST00000508604 GAB3Q8WWW8 586 aa4.31□□□□□ -1.72
NUP54-208ENST00000508604 OXSMQ9NWU1 459 aa4.31□□□□□ -1.72
NUP54-208ENST00000508604 TLK1Q9UKI8 766 aa4.31□□□□□ -1.72
NUP54-208ENST00000508604 CHST2Q9Y4C5 530 aa4.31□□□□□ -1.72
NUP54-208ENST00000508604 UNC119BA6NIH7 251 aa4.3□□□□□ -1.72
NUP54-208ENST00000508604 DNAJC8O75937 253 aaPredicted RBP4.3□□□□□ -1.72
NUP54-208ENST00000508604 ESRRBO95718 433 aa4.3□□□□□ -1.72
NUP54-208ENST00000508604 ZSCAN20P17040 1043 aaPredicted RBP4.3□□□□□ -1.72
NUP54-208ENST00000508604 PTTG1IPP53801 180 aa4.3□□□□□ -1.72
NUP54-208ENST00000508604 LRRC32Q14392 662 aa4.3□□□□□ -1.72
NUP54-208ENST00000508604 GLB1L2Q8IW92 636 aa4.3□□□□□ -1.72
NUP54-208ENST00000508604 SIMC1Q8NDZ2 872 aa4.3□□□□□ -1.72
NUP54-208ENST00000508604 CLUHP3Q96NS8 147 aa4.3□□□□□ -1.72
NUP54-208ENST00000508604 DUSP26Q9BV47 211 aa4.3□□□□□ -1.72
NUP54-208ENST00000508604 TYRP1P17643 537 aa4.29□□□□□ -1.72
NUP54-208ENST00000508604 MGAT5Q09328 741 aa4.29□□□□□ -1.72
NUP54-208ENST00000508604 SPDYE7PQ495Y7 208 aa4.29□□□□□ -1.72
NUP54-208ENST00000508604 PDZD4Q76G19 769 aaPredicted RBP4.29□□□□□ -1.72
NUP54-208ENST00000508604 GPRIN1Q7Z2K8 1008 aa4.29□□□□□ -1.72
NUP54-208ENST00000508604 KIAA1586Q9HCI6 787 aa4.29□□□□□ -1.72
NUP54-208ENST00000508604 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.29□□□□□ -1.72
NUP54-208ENST00000508604 MSRAQ9UJ68 235 aa4.29□□□□□ -1.72
NUP54-208ENST00000508604 FPGT-TNNI3KV9GXZ4 949 aa4.29□□□□□ -1.72
NUP54-208ENST00000508604 SEC24DO94855 1032 aaPredicted RBP4.29□□□□□ -1.72
NUP54-208ENST00000508604 FOSP01100 380 aaPredicted RBP4.29□□□□□ -1.72
NUP54-208ENST00000508604 ITGAMP11215 1152 aa4.29□□□□□ -1.72
NUP54-208ENST00000508604 FOXI1Q12951 378 aa4.29□□□□□ -1.72
NUP54-208ENST00000508604 RESTQ13127 1097 aa4.29□□□□□ -1.72
NUP54-208ENST00000508604 TP53BP2Q13625 1128 aa4.29□□□□□ -1.72
NUP54-208ENST00000508604 PDCD4Q53EL6 469 aaKnown RBP4.29□□□□□ -1.72
NUP54-208ENST00000508604 SP5Q6BEB4 398 aaPredicted RBP4.29□□□□□ -1.72
NUP54-208ENST00000508604 MSL3Q8N5Y2 521 aaKnown RBP4.29□□□□□ -1.72
NUP54-208ENST00000508604 EFHBQ8N7U6 833 aa4.29□□□□□ -1.72
NUP54-208ENST00000508604 ZFP28Q8NHY6 868 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms