RNA–Protein interactions for RNA: ENST00000508249.1

UBE2D3-223, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 604 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-223	ENST00000508249	SPTLC1	O15269	473 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	HBP1	O60381	514 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	KIN	O60870	393 aa	Known RBP	10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	ZC3H11A	O75152	810 aa	Known RBP eCLIP	10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	BAG4	O95429	457 aa	Known RBP	10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	EFEMP2	O95967	443 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	CNP	P09543	421 aa	Known RBP	10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	FGFR4	P22455	802 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	STARD6	P59095	220 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	HTR4	Q13639	388 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	GNL2	Q13823	731 aa	Known RBP	10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	ZNF528	Q3MIS6	628 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	KIAA0319	Q5VV43	1072 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	ZNF710	Q8N1W2	664 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	ZBTB44	Q8NCP5	570 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	TNFRSF25	Q93038	417 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	TMEM169	Q96HH4	297 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	KLHL5	Q96PQ7	755 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	DDX23	Q9BUQ8	820 aa	Known RBP	10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	RHOBTB2	Q9BYZ6	727 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	EPC1	Q9H2F5	836 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	NRDE2	Q9H7Z3	1164 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	WDR6	Q9NNW5	1121 aa	Known RBP	10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	ZNF302	Q9NR11	478 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	SLC2A4RG	Q9NR83	387 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	NOL7	Q9UMY1	257 aa	Known RBP	10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	SIT1	Q9Y3P8	196 aa		10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	FASN	P49327	2511 aa	Known RBP	10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	ANKRD11	Q6UB99	2663 aa	Predicted RBP	10.3	□□□□□ -0.76
UBE2D3-223	ENST00000508249	AKAP13	Q12802	2813 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	TDRD15	B5MCY1	1934 aa	Known RBP	10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	DMXL2	Q8TDJ6	3036 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	LAMA5	O15230	3695 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	SHISA7	A6NL88	538 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	BTBD18	B2RXH4	712 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	ADAMTS3	O15072	1205 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	MARCH6	O60337	910 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	CCNT1	O60563	726 aa	Known RBP	10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	PSMD10	O75832	226 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	TDP2	O95551	362 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	GALT	P07902	379 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	CA8	P35219	290 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	SLC11A1	P49279	550 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	NR5A1	Q13285	461 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	COL9A2	Q14055	689 aa	Predicted RBP	10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	ZNF484	Q5JVG2	852 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	ODR4	Q5SWX8	454 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	RNF168	Q8IYW5	571 aa	Predicted RBP	10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	ABI1	Q8IZP0	508 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	RNF169	Q8NCN4	708 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	ST13P5	Q8NFI4	369 aa	Predicted RBP	10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	ETNPPL	Q8TBG4	499 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	OXER1	Q8TDS5	423 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	BBX	Q8WY36	941 aa	Predicted RBP	10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	LPP	Q93052	612 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	ZNF668	Q96K58	619 aa	Predicted RBP	10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	KCNMB3	Q9NPA1	279 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	MAN1C1	Q9NR34	630 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	DISC1	Q9NRI5	854 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	TBC1D13	Q9NVG8	400 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	SMG5	Q9UPR3	1016 aa	Known RBP	10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	SMC3	Q9UQE7	1217 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	MTF2	Q9Y483	593 aa	Predicted RBP	10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	SAMM50	Q9Y512	469 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	PPME1	Q9Y570	386 aa		10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	MAFB	Q9Y5Q3	323 aa	Predicted RBP	10.29	□□□□□ -0.76
UBE2D3-223	ENST00000508249	ITPR1	Q14643	2758 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	RALGAPA1	Q6GYQ0	2036 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	CNOT1	A5YKK6	2376 aa	Known RBP	10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	DDX39A	O00148	427 aa	Known RBP	10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	EDIL3	O43854	480 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	RFPL2	O75678	378 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	TDGF1	P13385	188 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	PDIA4	P13667	645 aa	Known RBP	10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	PDC	P20941	246 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	EIF4B	P23588	611 aa	Known RBP	10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	ALDH7A1	P49419	539 aa	Known RBP	10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	GPC3	P51654	580 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	AFF1	P51825	1210 aa	Known RBP	10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	NLRP11	P59045	1033 aa	Known RBP	10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	PPP2R5C	Q13362	524 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	CUL4A	Q13619	759 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	GIT2	Q14161	759 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	PDXDC2P	Q6P474	469 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	B3GNT9	Q6UX72	402 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	MIER3	Q7Z3K6	550 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	INTS4	Q96HW7	963 aa	Known RBP	10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	RTKN	Q9BST9	563 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	RPP25	Q9BUL9	199 aa	Known RBP	10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	MRPL9	Q9BYD2	267 aa	Known RBP	10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	NRBP2	Q9NSY0	501 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	NCDN	Q9UBB6	729 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	FBXO4	Q9UKT5	387 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	CDV3	Q9UKY7	258 aa	Known RBP	10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	GREB1	Q4ZG55	1949 aa		10.28	□□□□□ -0.76
UBE2D3-223	ENST00000508249	FREM2	Q5SZK8	3169 aa		10.27	□□□□□ -0.77
UBE2D3-223	ENST00000508249	PKD1L2	Q7Z442	2459 aa		10.27	□□□□□ -0.77
UBE2D3-223	ENST00000508249	STK25	O00506	426 aa		10.27	□□□□□ -0.77
UBE2D3-223	ENST00000508249	MAGEB2	O15479	319 aa		10.27	□□□□□ -0.77
UBE2D3-223	ENST00000508249	NEMF	O60524	1076 aa		10.27	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms