RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 HGSO14964 777 aaPredicted RBP5.07□□□□□ -1.6
USP54-217ENST00000498213 PRODHO43272 600 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 KCNQ3O43525 872 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 DIAPH1O60610 1272 aaKnown RBP5.07□□□□□ -1.6
USP54-217ENST00000498213 C8BP07358 591 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 GJA9P57773 515 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 NKX3-2P78367 333 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 SMAD3P84022 425 aaKnown RBP5.07□□□□□ -1.6
USP54-217ENST00000498213 TEFQ10587 303 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 TESK1Q15569 626 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 LRRC26Q2I0M4 334 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 VWA3BQ502W6 1294 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 SLC35F1Q5T1Q4 408 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 NT5DC1Q5TFE4 455 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 STEAP3Q658P3 488 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 Q8N1Y9 231 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 AGBL3Q8NEM8 1001 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 ANKS1AQ92625 1134 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 TEPSINQ96N21 525 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 PHF20Q9BVI0 1012 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 ADAM7Q9H2U9 754 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 PNNQ9H307 717 aaKnown RBP5.07□□□□□ -1.6
USP54-217ENST00000498213 PRDM12Q9H4Q4 367 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 IGSF5Q9NSI5 407 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 FBXL7Q9UJT9 491 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 NUDCQ9Y266 331 aa5.07□□□□□ -1.6
USP54-217ENST00000498213 ZFHX2Q9C0A1 2572 aaPredicted RBP5.07□□□□□ -1.6
USP54-217ENST00000498213 ZNF646O15015 1829 aaPredicted RBP5.07□□□□□ -1.6
USP54-217ENST00000498213 PFASO15067 1338 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 UBN2Q6ZU65 1347 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 TCF20Q9UGU0 1960 aaKnown RBP5.06□□□□□ -1.6
USP54-217ENST00000498213 SH3D21A4FU49 640 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 ERVV-1B6SEH8 477 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 SNRPA1P09661 255 aaKnown RBP5.06□□□□□ -1.6
USP54-217ENST00000498213 STAT5AP42229 794 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 SARSP49591 514 aaKnown RBP5.06□□□□□ -1.6
USP54-217ENST00000498213 GPSM2P81274 684 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 IFRD2Q12894 506 aaPredicted RBP5.06□□□□□ -1.6
USP54-217ENST00000498213 C17orf99Q6UX52 265 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 NSMFQ6X4W1 530 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 DPH6Q7L8W6 267 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 MIB1Q86YT6 1006 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 FAM126BQ8IXS8 530 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 CARFQ8N187 725 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 TP53I13Q8NBR0 393 aaPredicted RBP5.06□□□□□ -1.6
USP54-217ENST00000498213 C1orf159Q96HA4 380 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 CFAP53Q96M91 514 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 IPO9Q96P70 1041 aaKnown RBP5.06□□□□□ -1.6
USP54-217ENST00000498213 NOX5Q96PH1 765 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 PCGF6Q9BYE7 350 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.06□□□□□ -1.6
USP54-217ENST00000498213 DEFB129Q9H1M3 183 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 GPR27Q9NS67 375 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 BABAM1Q9NWV8 329 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 CFAP54Q96N23 3096 aa5.06□□□□□ -1.6
USP54-217ENST00000498213 ADGRA2Q96PE1 1338 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 SSC5DA1L4H1 1573 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 PTPRZ1P23471 2315 aaPredicted RBP5.05□□□□□ -1.6
USP54-217ENST00000498213 ZFHX4Q86UP3 3567 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 BTBD19C9JJ37 291 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 DLX3O60479 287 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 NTSR2O95665 410 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 FGFR1P11362 822 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 PABPC1P11940 636 aaKnown RBP5.05□□□□□ -1.6
USP54-217ENST00000498213 ITGB8P26012 769 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 GTF2F1P35269 517 aaKnown RBP eCLIP5.05□□□□□ -1.6
USP54-217ENST00000498213 FLT3LGP49771 235 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 MMP14P50281 582 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 PLP2Q04941 152 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 GRAPQ13588 217 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 MTERF2Q49AM1 385 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 DENND5AQ6IQ26 1287 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 DDX46Q7L014 1031 aaKnown RBP5.05□□□□□ -1.6
USP54-217ENST00000498213 FRMD5Q7Z6J6 570 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 APOBEC3FQ8IUX4 373 aaKnown RBP5.05□□□□□ -1.6
USP54-217ENST00000498213 ANKRD13AQ8IZ07 590 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 FAM26EQ8N5C1 309 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 KYQ8NBH2 561 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 GRAPLQ8TC17 118 aaPredicted RBP5.05□□□□□ -1.6
USP54-217ENST00000498213 DCAF4Q8WV16 495 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 TOE1Q96GM8 510 aaKnown RBP5.05□□□□□ -1.6
USP54-217ENST00000498213 EYA3Q99504 573 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 CDC6Q99741 560 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 GORASP1Q9BQQ3 440 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 C11orf84Q9BUA3 381 aaPredicted RBP5.05□□□□□ -1.6
USP54-217ENST00000498213 CHMP4AQ9BY43 222 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 MYOTQ9UBF9 498 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 RALYQ9UKM9 306 aaKnown RBP5.05□□□□□ -1.6
USP54-217ENST00000498213 NPFFR2Q9Y5X5 522 aa5.05□□□□□ -1.6
USP54-217ENST00000498213 DUOX1Q9NRD9 1551 aa5.04□□□□□ -1.6
USP54-217ENST00000498213 PI4K2BG5E9Z4 385 aa5.04□□□□□ -1.6
USP54-217ENST00000498213 ARNTLO00327 626 aa5.04□□□□□ -1.6
USP54-217ENST00000498213 U2AF1L5P0DN76 240 aaPredicted RBP5.04□□□□□ -1.6
USP54-217ENST00000498213 HSP90B1P14625 803 aaKnown RBP5.04□□□□□ -1.6
USP54-217ENST00000498213 CAPN2P17655 700 aa5.04□□□□□ -1.6
USP54-217ENST00000498213 U2AF1Q01081 240 aaKnown RBP eCLIP5.04□□□□□ -1.6
USP54-217ENST00000498213 MTHFSDQ2M296 383 aaKnown RBP5.04□□□□□ -1.6
USP54-217ENST00000498213 KIZQ2M2Z5 673 aa5.04□□□□□ -1.6
USP54-217ENST00000498213 ZXDCQ2QGD7 858 aaPredicted RBP5.04□□□□□ -1.6
USP54-217ENST00000498213 SPATS1Q496A3 300 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms