RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 NPTXRO95502 500 aa13.05□□□□□ -0.32
CUX1-210ENST00000497815 HARSP12081 509 aaKnown RBP13.05□□□□□ -0.32
CUX1-210ENST00000497815 SCP2P22307 547 aa13.05□□□□□ -0.32
CUX1-210ENST00000497815 AXLP30530 894 aa13.05□□□□□ -0.32
CUX1-210ENST00000497815 ABCD1P33897 745 aa13.05□□□□□ -0.32
CUX1-210ENST00000497815 SHHQ15465 462 aa13.05□□□□□ -0.32
CUX1-210ENST00000497815 KLHL40Q2TBA0 621 aa13.05□□□□□ -0.32
CUX1-210ENST00000497815 ZNF568Q3ZCX4 644 aa13.05□□□□□ -0.32
CUX1-210ENST00000497815 ZNF658Q5TYW1 1059 aaPredicted RBP13.05□□□□□ -0.32
CUX1-210ENST00000497815 MYOCDQ8IZQ8 938 aa13.05□□□□□ -0.32
CUX1-210ENST00000497815 RNF169Q8NCN4 708 aa13.05□□□□□ -0.32
CUX1-210ENST00000497815 SCFD1Q8WVM8 642 aa13.05□□□□□ -0.32
CUX1-210ENST00000497815 ZBTB45Q96K62 511 aaPredicted RBP13.05□□□□□ -0.32
CUX1-210ENST00000497815 ACO2Q99798 780 aaKnown RBP13.05□□□□□ -0.32
CUX1-210ENST00000497815 GDF15Q99988 308 aa13.05□□□□□ -0.32
CUX1-210ENST00000497815 EIF2AQ9BY44 585 aaKnown RBP13.05□□□□□ -0.32
CUX1-210ENST00000497815 CHST12Q9NRB3 414 aa13.05□□□□□ -0.32
CUX1-210ENST00000497815 RGS18Q9NS28 235 aa13.05□□□□□ -0.32
CUX1-210ENST00000497815 CXXC1Q9P0U4 656 aaPredicted RBP13.05□□□□□ -0.32
CUX1-210ENST00000497815 EXOC7Q9UPT5 735 aa13.05□□□□□ -0.32
CUX1-210ENST00000497815 A0A1B0GUA9 196 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 ANKRD63C9JTQ0 380 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 N4BP3O15049 544 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 EIF3DO15371 548 aaKnown RBP eCLIP13.04□□□□□ -0.32
CUX1-210ENST00000497815 BAIAP3O94812 1187 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 UPP2O95045 317 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 HOXD13P35453 343 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 KCNJ6P48051 423 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 WDR5P61964 334 aaKnown RBP13.04□□□□□ -0.32
CUX1-210ENST00000497815 DEFB103AP81534 67 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 MORC3Q14149 939 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 UBXN11Q5T124 520 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 SLC27A1Q6PCB7 646 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 SLC24A5Q71RS6 500 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 TMCO2Q7Z6W1 182 aaPredicted RBP13.04□□□□□ -0.32
CUX1-210ENST00000497815 ZNF507Q8TCN5 953 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 HERVK_113Q902F9 699 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 SYAP1Q96A49 352 aaPredicted RBP13.04□□□□□ -0.32
CUX1-210ENST00000497815 RNPC3Q96LT9 517 aaKnown RBP13.04□□□□□ -0.32
CUX1-210ENST00000497815 ADPGKQ9BRR6 497 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 APOL6Q9BWW8 343 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 TRIM6Q9C030 488 aaPredicted RBP13.04□□□□□ -0.32
CUX1-210ENST00000497815 TSPYL2Q9H2G4 693 aaPredicted RBP13.04□□□□□ -0.32
CUX1-210ENST00000497815 TMEM206Q9H813 350 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 FAM105AQ9NUU6 356 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 TNFSF13BQ9Y275 285 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 ZMYM2Q9UBW7 1377 aa13.04□□□□□ -0.32
CUX1-210ENST00000497815 CLDN3O15551 220 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 EFCAB14O75071 495 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 TOM1L1O75674 476 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 AMHP03971 560 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 BMP6P22004 513 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 SKOR2Q2VWA4 1001 aaPredicted RBP13.03□□□□□ -0.32
CUX1-210ENST00000497815 FAM117BQ6P1L5 589 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 SLC39A4Q6P5W5 647 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 MPZL3Q6UWV2 235 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 ZPBP2Q6X784 338 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 KCNN1Q92952 543 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 CCDC51Q96ER9 411 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 CDT1Q9H211 546 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 MTIF3Q9H2K0 278 aaKnown RBP13.03□□□□□ -0.32
CUX1-210ENST00000497815 C1orf112Q9NSG2 853 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 LRFN2Q9ULH4 789 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 HES2Q9Y543 173 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 PCDHB2Q9Y5E7 798 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 SLC4A7Q9Y6M7 1214 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 UBE4BO95155 1302 aa13.03□□□□□ -0.32
CUX1-210ENST00000497815 TNRC18O15417 2968 aaPredicted RBP13.03□□□□□ -0.32
CUX1-210ENST00000497815 C9IYK1 514 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 TULP1O00294 542 aaPredicted RBP13.02□□□□□ -0.33
CUX1-210ENST00000497815 KIF20AO95235 890 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 PIGRP01833 764 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 PRCPP42785 496 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 OSTNP61366 133 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 KNOP1Q1ED39 458 aaKnown RBP13.02□□□□□ -0.33
CUX1-210ENST00000497815 BMT2Q1RMZ1 405 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 SEZ6Q53EL9 994 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 ECHDC2Q86YB7 292 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 THNSL1Q8IYQ7 743 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 TRIML1Q8N9V2 468 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 NOC3LQ8WTT2 800 aaKnown RBP13.02□□□□□ -0.33
CUX1-210ENST00000497815 POMGNT1Q8WZA1 660 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 LPPQ93052 612 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 MSTO1Q9BUK6 570 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 HAPLN2Q9GZV7 340 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 GBP3Q9H0R5 595 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 NXF3Q9H4D5 531 aaKnown RBP13.02□□□□□ -0.33
CUX1-210ENST00000497815 PCIF1Q9H4Z3 704 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 PTPRHQ9HD43 1115 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 IPPQ9Y573 584 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 PCDHB7Q9Y5E2 793 aa13.02□□□□□ -0.33
CUX1-210ENST00000497815 TET1Q8NFU7 2136 aa13.01□□□□□ -0.33
CUX1-210ENST00000497815 A0A0U1RQF3 1178 aa13.01□□□□□ -0.33
CUX1-210ENST00000497815 ABLIM1O14639 778 aa13.01□□□□□ -0.33
CUX1-210ENST00000497815 CLIC2O15247 247 aa13.01□□□□□ -0.33
CUX1-210ENST00000497815 TGFB1I1O43294 461 aa13.01□□□□□ -0.33
CUX1-210ENST00000497815 CD44P16070 742 aaKnown RBP13.01□□□□□ -0.33
CUX1-210ENST00000497815 PROZP22891 400 aa13.01□□□□□ -0.33
CUX1-210ENST00000497815 AKAP5P24588 427 aa13.01□□□□□ -0.33
CUX1-210ENST00000497815 RAB27AP51159 221 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms