RNA–Protein interactions for RNA: ENST00000497139.5

VEGFA-215, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 2,746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-215ENST00000497139 SLC30A5Q8TAD4 765 aa13.91□□□□□ -0.18
VEGFA-215ENST00000497139 UHMK1Q8TAS1 419 aaKnown RBP13.91□□□□□ -0.18
VEGFA-215ENST00000497139 SLCO2A1Q92959 643 aa13.91□□□□□ -0.18
VEGFA-215ENST00000497139 ASCC2Q9H1I8 757 aaPredicted RBP13.91□□□□□ -0.18
VEGFA-215ENST00000497139 PHTF1Q9UMS5 762 aa13.91□□□□□ -0.18
VEGFA-215ENST00000497139 FAM47DPA6NHR8 397 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 PSMG1O95456 288 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 CAV1Q03135 178 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 EXOC3L4Q17RC7 722 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 PHLDB3Q6NSJ2 640 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 C11orf63Q6NUN7 778 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 C12orf50Q8NA57 414 aaPredicted RBP13.9□□□□□ -0.18
VEGFA-215ENST00000497139 NRG4Q8WWG1 115 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 RIOK1Q9BRS2 568 aaKnown RBP13.9□□□□□ -0.18
VEGFA-215ENST00000497139 ANGPTL2Q9UKU9 493 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 MTUS1Q9ULD2 1270 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 PALM3A6NDB9 673 aaPredicted RBP13.9□□□□□ -0.18
VEGFA-215ENST00000497139 C2CD2LO14523 706 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 TTC4O95801 387 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 FOXN2P32314 431 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 TCEAL1Q15170 157 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 MYLK4Q86YV6 388 aaPredicted RBP13.9□□□□□ -0.18
VEGFA-215ENST00000497139 TRIM42Q8IWZ5 723 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.9□□□□□ -0.182e-42■□□□□ 11.1
VEGFA-215ENST00000497139 CABLES1Q8TDN4 633 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 MORC4Q8TE76 937 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 U2AF1L4Q8WU68 220 aaKnown RBP13.9□□□□□ -0.18
VEGFA-215ENST00000497139 C10orf82Q8WW14 230 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 STMN2Q93045 179 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 HIC2Q96JB3 615 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 CRAMP1Q96RY5 1269 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 LZTS2Q9BRK4 669 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 EPB41L1Q9H4G0 881 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 HDAC9Q9UKV0 1011 aa13.9□□□□□ -0.18
VEGFA-215ENST00000497139 A0A1B0GUL6 1792 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 GTPBP10A4D1E9 387 aaKnown RBP13.89□□□□□ -0.19
VEGFA-215ENST00000497139 BTBD19C9JJ37 291 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 CAPN9O14815 690 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 PABPC4LP0CB38 370 aaKnown RBP13.89□□□□□ -0.19
VEGFA-215ENST00000497139 CREB1P16220 341 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 PON1P27169 355 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 SCNN1BP51168 640 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 PABPC4Q13310 644 aaKnown RBP eCLIP13.89□□□□□ -0.195e-10■■■■■ 60.6
VEGFA-215ENST00000497139 GRM4Q14833 912 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 CHRNA2Q15822 529 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 UBAP2Q5T6F2 1119 aaKnown RBP13.89□□□□□ -0.19
VEGFA-215ENST00000497139 CEP128Q6ZU80 1094 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 RBM46Q8TBY0 533 aaKnown RBP13.89□□□□□ -0.19
VEGFA-215ENST00000497139 CCDC77Q9BR77 488 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 BTBD10Q9BSF8 475 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 OCEL1Q9H607 264 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 BMP2KQ9NSY1 1161 aaPredicted RBP13.89□□□□□ -0.19
VEGFA-215ENST00000497139 DNAJB4Q9UDY4 337 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 ZFP69BQ9UJL9 534 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 ATP9BO43861 1147 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 EDF1O60869 148 aaKnown RBP13.89□□□□□ -0.19
VEGFA-215ENST00000497139 PIM1P11309 404 aaPredicted RBP13.89□□□□□ -0.19
VEGFA-215ENST00000497139 PLCG2P16885 1265 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 CD151P48509 253 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 SESN3P58005 492 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 DEUP1Q05D60 604 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 LRRC41Q15345 812 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 LETM2Q2VYF4 491 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 MARK2Q7KZI7 788 aaKnown RBP13.89□□□□□ -0.19
VEGFA-215ENST00000497139 HS2ST1Q7LGA3 356 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 RHOT2Q8IXI1 618 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 ST13P4Q8IZP2 240 aaPredicted RBP13.89□□□□□ -0.19
VEGFA-215ENST00000497139 DNAJC19Q96DA6 116 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 TYW1Q9NV66 732 aaKnown RBP13.89□□□□□ -0.19
VEGFA-215ENST00000497139 TNS2Q63HR2 1409 aa13.89□□□□□ -0.19
VEGFA-215ENST00000497139 ROBO3Q96MS0 1386 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 SMIM31A0A1B0GVY4 71 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 PDE8AO60658 829 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 ASMTLO95671 621 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 ITIH2P19823 946 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 GNA11P29992 359 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 COILP38432 576 aaPredicted RBP13.88□□□□□ -0.19
VEGFA-215ENST00000497139 SEL1L2Q5TEA6 688 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 ZNF449Q6P9G9 518 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 CCDC174Q6PII3 467 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 SYDE1Q6ZW31 735 aaPredicted RBP13.88□□□□□ -0.19
VEGFA-215ENST00000497139 EPM2AIP1Q7L775 607 aaPredicted RBP13.88□□□□□ -0.19
VEGFA-215ENST00000497139 DGKHQ86XP1 1220 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 ARHGAP24Q8N264 748 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 LRRC43Q8N309 656 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 MAML3Q96JK9 1138 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 MTMR9Q96QG7 549 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 MXD3Q9BW11 206 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 KCTD10Q9H3F6 313 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 ERVV-2B6SEH9 535 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 HGSO14964 777 aaPredicted RBP13.88□□□□□ -0.19
VEGFA-215ENST00000497139 PRPF4O43172 522 aaKnown RBP eCLIP13.88□□□□□ -0.191e-19■■■□□ 16.6
VEGFA-215ENST00000497139 SLC26A4O43511 780 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 ASLP04424 464 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 STAT1P42224 750 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 ITGA9Q13797 1035 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 SPARCL1Q14515 664 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 STAT4Q14765 748 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 TMEM259Q4ZIN3 620 aa13.88□□□□□ -0.19
VEGFA-215ENST00000497139 KRT79Q5XKE5 535 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms