RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 GABPB1Q06547 395 aaPredicted RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 GRSF1Q12849 480 aaKnown RBP eCLIP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 GRIK3Q13003 919 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 TRPC3Q13507 836 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 SEMA5AQ13591 1074 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 CUL4AQ13619 759 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 TUBA3CQ13748 450 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 AUHQ13825 339 aaKnown RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 BLMHQ13867 455 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 ZNF267Q14586 743 aaPredicted RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 CWF19L2Q2TBE0 894 aaKnown RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 CFAP221Q4G0U5 840 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 ZMYM1Q5SVZ6 1142 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 RBM20Q5T481 1227 aaKnown RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 TMEM132EQ6IEE7 984 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 FAM173BQ6P4H8 233 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 C6orf15Q6UXA7 325 aaPredicted RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 TTLL7Q6ZT98 887 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 C15orf52Q6ZUT6 534 aaKnown RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 SPATA21Q7Z572 469 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 SRGAP1Q7Z6B7 1085 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 RETREG3Q86VR2 466 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 GRAMD2AQ8IUY3 354 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 CRACR2BQ8N4Y2 399 aaPredicted RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 OR56B2PQ8NGI1 322 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 CEP70Q8NHQ1 597 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 ADAM32Q8TC27 787 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 MIPOL1Q8TD10 442 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 DCAF11Q8TEB1 546 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 FAM216AQ8WUB2 273 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 RAPGEF5Q92565 580 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 PTP4A1Q93096 173 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 SLC35B4Q969S0 331 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 EXOC4Q96A65 974 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 LRRC59Q96AG4 307 aaKnown RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 VPS50Q96JG6 964 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 ARL5BQ96KC2 179 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 MRGPRX2Q96LB1 330 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 SLC4A9Q96Q91 983 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 TTC1Q99614 292 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 GAL3ST1Q99999 423 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 TSEN34Q9BSV6 310 aaKnown RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 MENTQ9BUN1 341 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 TMEM120AQ9BXJ8 343 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 RASSF4Q9H2L5 321 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 MMADHCQ9H3L0 296 aaPredicted RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 SERHL2Q9H4I8 314 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 BICC1Q9H694 974 aaKnown RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 RXFP3Q9NSD7 469 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 HSPBP1Q9NZL4 362 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 MARK1Q9P0L2 795 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 PCOLCE2Q9UKZ9 415 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 MED16Q9Y2X0 877 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 KDRP35968 1356 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 DHX29Q7Z478 1369 aaKnown RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 ARHGAP10A1A4S6 786 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 ENO4A6NNW6 628 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 CAPN14A8MX76 684 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 TTC34A8MYJ7 566 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 RSPH10B2B2RC85 870 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 J3QL48 77 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 AP3D1O14617 1153 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 GIPC1O14908 333 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 YKT6O15498 198 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 ZW10O43264 779 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 SPOPO43791 374 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 B4GALT4O60513 344 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 FSBPO95073 299 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 CD2BP2O95400 341 aaKnown RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 PLGP00747 810 aaPredicted RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 CSTBP04080 98 aaKnown RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 RSPH10BP0C881 870 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 HPGDP15428 266 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 PORP16435 677 aaPredicted RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 BPIP17213 487 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 LAG3P18627 525 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 ATP5JP18859 108 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 HLA-DPA1P20036 260 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 IGFBP4P22692 258 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 CHMLP26374 656 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 CSTF2P33240 577 aaKnown RBP eCLIP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 MSH2P43246 934 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 ABCG1P45844 678 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 MNAT1P51948 309 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 KPNA1P52294 538 aaPredicted RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 SLC12A3P55017 1021 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 HTRA3P83110 453 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 HTD2P86397 168 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 CAP1Q01518 475 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 DR1Q01658 176 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 GUCY1B3Q02153 619 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 ACTN3Q08043 901 aaPredicted RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 C19orf57Q0VDD7 668 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 CUL4BQ13620 913 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 BYSLQ13895 437 aaKnown RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 LRP8Q14114 963 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 PLCL1Q15111 1095 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 LRRFIP1Q32MZ4 808 aaKnown RBP4.57□□□□□ -1.68
BRCA1-220ENST00000492859 FUT11Q495W5 492 aa4.57□□□□□ -1.68
BRCA1-220ENST00000492859 OXLD1Q5BKU9 147 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms