RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 CSRNP2Q9H175 543 aa15.16■□□□□ 0.02
COL6A3-211ENST00000491233 TSHZ2Q9NRE2 1034 aa15.16■□□□□ 0.02
COL6A3-211ENST00000491233 LIMCH1Q9UPQ0 1083 aa15.16■□□□□ 0.02
COL6A3-211ENST00000491233 PRG3Q9Y2Y8 225 aaPredicted RBP15.16■□□□□ 0.02
COL6A3-211ENST00000491233 HES2Q9Y543 173 aa15.16■□□□□ 0.02
COL6A3-211ENST00000491233 NRP1O14786 923 aa15.15■□□□□ 0.02
COL6A3-211ENST00000491233 ARF4P18085 180 aaPredicted RBP15.15■□□□□ 0.02
COL6A3-211ENST00000491233 MTHFRP42898 656 aa15.15■□□□□ 0.02
COL6A3-211ENST00000491233 POU5F1BQ06416 359 aa15.15■□□□□ 0.02
COL6A3-211ENST00000491233 SIGLEC14Q08ET2 396 aa15.15■□□□□ 0.02
COL6A3-211ENST00000491233 NCBP1Q09161 790 aaKnown RBP15.15■□□□□ 0.02
COL6A3-211ENST00000491233 KANK3Q6NY19 840 aa15.15■□□□□ 0.02
COL6A3-211ENST00000491233 BMP8AQ7Z5Y6 402 aa15.15■□□□□ 0.02
COL6A3-211ENST00000491233 C8orf76Q96K31 380 aa15.15■□□□□ 0.02
COL6A3-211ENST00000491233 FBXL18Q96ME1 805 aa15.15■□□□□ 0.02
COL6A3-211ENST00000491233 RNF39Q9H2S5 420 aa15.15■□□□□ 0.02
COL6A3-211ENST00000491233 NXF3Q9H4D5 531 aaKnown RBP15.15■□□□□ 0.02
COL6A3-211ENST00000491233 UBN1Q9NPG3 1134 aa15.15■□□□□ 0.02
COL6A3-211ENST00000491233 GPRC5CQ9NQ84 441 aa15.15■□□□□ 0.02
COL6A3-211ENST00000491233 MARCH5Q9NX47 278 aa15.15■□□□□ 0.02
COL6A3-211ENST00000491233 FAN1Q9Y2M0 1017 aa15.15■□□□□ 0.02
COL6A3-211ENST00000491233 NR2E1Q9Y466 385 aa15.15■□□□□ 0.02
COL6A3-211ENST00000491233 ARL5CA6NH57 179 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 LRRIQ4A6NIV6 560 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 C2CD4DB7Z1M9 353 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 INPPL1O15357 1258 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 B4GALT5O43286 388 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 MED24O75448 989 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 ALDH2P05091 517 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 OR52Z1P0C646 297 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 SPATA31C1P0DKV0 1188 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 SCNN1GP51170 649 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 KIAA1841Q6NSI8 718 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 MAEAQ7L5Y9 396 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 ZBTB33Q86T24 672 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 CDR2LQ86X02 465 aaPredicted RBP15.14■□□□□ 0.01
COL6A3-211ENST00000491233 COLGALT2Q8IYK4 626 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 PBXIP1Q96AQ6 731 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 RIPOR3Q96MK2 946 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 ZFP42Q96MM3 310 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 KLHL5Q96PQ7 755 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 HERC2P3Q9BVR0 1158 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 EMILIN2Q9BXX0 1053 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 NFKBIZQ9BYH8 718 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 TRIM6Q9C030 488 aaPredicted RBP15.14■□□□□ 0.01
COL6A3-211ENST00000491233 KCNH6Q9H252 994 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 TUFT1Q9NNX1 390 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 STK39Q9UEW8 545 aa15.14■□□□□ 0.01
COL6A3-211ENST00000491233 SPDYE4A6NLX3 237 aa15.13■□□□□ 0.01
COL6A3-211ENST00000491233 NPTXRO95502 500 aa15.13■□□□□ 0.01
COL6A3-211ENST00000491233 SOD2P04179 222 aa15.13■□□□□ 0.01
COL6A3-211ENST00000491233 URODP06132 367 aa15.13■□□□□ 0.01
COL6A3-211ENST00000491233 XRCC6P12956 609 aaKnown RBP eCLIP15.13■□□□□ 0.01
COL6A3-211ENST00000491233 OR1G1P47890 313 aa15.13■□□□□ 0.01
COL6A3-211ENST00000491233 DSC1Q08554 894 aa15.13■□□□□ 0.01
COL6A3-211ENST00000491233 POTEGQ6S5H5 508 aa15.13■□□□□ 0.01
COL6A3-211ENST00000491233 CABP7Q86V35 215 aa15.13■□□□□ 0.01
COL6A3-211ENST00000491233 PPFIBP1Q86W92 1011 aa15.13■□□□□ 0.01
COL6A3-211ENST00000491233 CATSPER3Q86XQ3 398 aa15.13■□□□□ 0.01
COL6A3-211ENST00000491233 SUGP1Q8IWZ8 645 aaKnown RBP15.13■□□□□ 0.01
COL6A3-211ENST00000491233 HACE1Q8IYU2 909 aa15.13■□□□□ 0.01
COL6A3-211ENST00000491233 MCPH1Q8NEM0 835 aa15.13■□□□□ 0.01
COL6A3-211ENST00000491233 FEZF2Q8TBJ5 459 aa15.13■□□□□ 0.01
COL6A3-211ENST00000491233 LLPHQ9BRT6 129 aaKnown RBP15.13■□□□□ 0.01
COL6A3-211ENST00000491233 SFXN1Q9H9B4 322 aa15.13■□□□□ 0.01
COL6A3-211ENST00000491233 MIOSQ9NXC5 875 aa15.13■□□□□ 0.01
COL6A3-211ENST00000491233 DBR1Q9UK59 544 aaKnown RBP15.13■□□□□ 0.01
COL6A3-211ENST00000491233 MYO10Q9HD67 2058 aa15.12■□□□□ 0.01
COL6A3-211ENST00000491233 C2CD2LO14523 706 aa15.12■□□□□ 0.01
COL6A3-211ENST00000491233 CNPP09543 421 aaKnown RBP15.12■□□□□ 0.01
COL6A3-211ENST00000491233 KLRC2P26717 231 aa15.12■□□□□ 0.01
COL6A3-211ENST00000491233 HMGN5P82970 282 aaKnown RBP15.12■□□□□ 0.01
COL6A3-211ENST00000491233 NHLH1Q02575 133 aa15.12■□□□□ 0.01
COL6A3-211ENST00000491233 ORC2Q13416 577 aaPredicted RBP15.12■□□□□ 0.01
COL6A3-211ENST00000491233 ZNF174Q15697 407 aa15.12■□□□□ 0.01
COL6A3-211ENST00000491233 TTC38Q5R3I4 469 aa15.12■□□□□ 0.01
COL6A3-211ENST00000491233 SLC27A1Q6PCB7 646 aa15.12■□□□□ 0.01
COL6A3-211ENST00000491233 TMC5Q6UXY8 1006 aa15.12■□□□□ 0.01
COL6A3-211ENST00000491233 TDRD5Q8NAT2 981 aaKnown RBP15.12■□□□□ 0.01
COL6A3-211ENST00000491233 ERMNQ8TAM6 284 aa15.12■□□□□ 0.01
COL6A3-211ENST00000491233 ASIC4Q96FT7 647 aa15.12■□□□□ 0.01
COL6A3-211ENST00000491233 POLR3CQ9BUI4 534 aaPredicted RBP15.12■□□□□ 0.01
COL6A3-211ENST00000491233 FOXP1Q9H334 677 aaPredicted RBP15.12■□□□□ 0.01
COL6A3-211ENST00000491233 MRPL17Q9NRX2 175 aaKnown RBP15.12■□□□□ 0.01
COL6A3-211ENST00000491233 GIT1Q9Y2X7 761 aa15.12■□□□□ 0.01
COL6A3-211ENST00000491233 ZMYM2Q9UBW7 1377 aa15.11■□□□□ 0.01
COL6A3-211ENST00000491233 F8W810 466 aa15.11■□□□□ 0.01
COL6A3-211ENST00000491233 LILRB3O75022 631 aa15.11■□□□□ 0.01
COL6A3-211ENST00000491233 AKAP5P24588 427 aa15.11■□□□□ 0.01
COL6A3-211ENST00000491233 GLUD2P49448 558 aa15.11■□□□□ 0.01
COL6A3-211ENST00000491233 CLCN4P51793 760 aa15.11■□□□□ 0.01
COL6A3-211ENST00000491233 GNL2Q13823 731 aaKnown RBP15.11■□□□□ 0.01
COL6A3-211ENST00000491233 ATAT1Q5SQI0 421 aa15.11■□□□□ 0.01
COL6A3-211ENST00000491233 CDCA2Q69YH5 1023 aaPredicted RBP15.11■□□□□ 0.01
COL6A3-211ENST00000491233 PPP4R3CPQ6ZMV5 832 aa15.11■□□□□ 0.01
COL6A3-211ENST00000491233 ZBTB8OSQ8IWT0 167 aa15.11■□□□□ 0.01
COL6A3-211ENST00000491233 RNF168Q8IYW5 571 aaPredicted RBP15.11■□□□□ 0.01
COL6A3-211ENST00000491233 FBXL6Q8N531 539 aa15.11■□□□□ 0.01
COL6A3-211ENST00000491233 FAM184AQ8NB25 1140 aa15.11■□□□□ 0.01
COL6A3-211ENST00000491233 KREMEN2Q8NCW0 462 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms