RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 CT47A1Q5JQC4 288 aaPredicted RBP4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 PIK3R6Q5UE93 754 aa4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 PRIMA1Q86XR5 153 aa4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 GPATCH11Q8N954 259 aa4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 SHCBP1Q8NEM2 672 aa4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 ATL2Q8NHH9 583 aa4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 E2F7Q96AV8 911 aa4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 CLIP3Q96DZ5 547 aa4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 RHOBTB2Q9BYZ6 727 aa4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 TLR9Q9NR96 1032 aa4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 REXO2Q9Y3B8 237 aaKnown RBP4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 CTDP1Q9Y5B0 961 aaPredicted RBP4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 PHLDB1Q86UU1 1377 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 CFAP69A5D8W1 941 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 PLIN1O60240 522 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 MAFO75444 373 aaPredicted RBP4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 F2P00734 622 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 FAM163BP0C2L3 166 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 JMJD7P0C870 316 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 TRAPPC10P48553 1259 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 FNTBP49356 437 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 ROM1Q03395 351 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 STRN3Q13033 797 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 TCIRG1Q13488 830 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 RIN1Q13671 783 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 GALEQ14376 348 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 MLC1Q15049 377 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 SEPT7Q16181 437 aaKnown RBP4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 FAM83BQ5T0W9 1011 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 KRTAP5-4Q6L8H1 288 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 SGMS1Q86VZ5 419 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 TPH2Q8IWU9 490 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 SPICE1Q8N0Z3 855 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 KIAA1958Q8N8K9 716 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 IL17DQ8TAD2 202 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 MAML3Q96JK9 1138 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 NELFAQ9H3P2 528 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 PCIF1Q9H4Z3 704 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 CABP5Q9NP86 173 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 CASS4Q9NQ75 786 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 ACSS2Q9NR19 701 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 SAE1Q9UBE0 346 aaPredicted RBP4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 HECAQ9UBI9 543 aaPredicted RBP4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 MCM8Q9UJA3 840 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 TNKSO95271 1327 aa4.02□□□□□ -1.77
DEPDC1-204ENST00000489862 CC2D2AQ9P2K1 1620 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 UBA6A0AVT1 1052 aaPredicted RBP4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 C2orf78A6NCI8 922 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 VSTM5A8MXK1 200 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 H7C1D1 291 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 PIP5K1CO60331 668 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 RHOBTB3O94955 611 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 SRGNP10124 158 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 CD53P19397 219 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 SLC9A1P19634 815 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 ID4P47928 161 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 ADCY7P51828 1080 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 ITKQ08881 620 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 OS9Q13438 667 aaPredicted RBP4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 HDAC1Q13547 482 aaPredicted RBP4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 SIM2Q14190 667 aaPredicted RBP4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 PCBP1Q15365 356 aaKnown RBP eCLIP4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 COLEC12Q5KU26 742 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 FAM102BQ5T8I3 360 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 PRAMEF9Q5VWM5 478 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 CDCA2Q69YH5 1023 aaPredicted RBP4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 SLFN12LQ6IEE8 588 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 CNNM4Q6P4Q7 775 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 KLHDC10Q6PID8 442 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 GRASPQ7Z6J2 395 aaPredicted RBP4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 LRRTM3Q86VH5 581 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 D2HGDHQ8N465 521 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 MAGEB6Q8N7X4 407 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 RPL10LQ96L21 214 aaKnown RBP4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 C16orf92Q96LL3 132 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 TUBGCP5Q96RT8 1024 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 SENP7Q9BQF6 1050 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 MSL2Q9HCI7 577 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 B4GALT6Q9UBX8 382 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 DENND2AQ9ULE3 1009 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 VWA7Q9Y334 891 aa4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 RBM8AQ9Y5S9 174 aaKnown RBP4.01□□□□□ -1.77
DEPDC1-204ENST00000489862 H2AFYO75367 372 aaKnown RBP4□□□□□ -1.77
DEPDC1-204ENST00000489862 ACRV1P26436 265 aa4□□□□□ -1.77
DEPDC1-204ENST00000489862 SOX5P35711 763 aa4□□□□□ -1.77
DEPDC1-204ENST00000489862 SETQ01105 290 aaPredicted RBP4□□□□□ -1.77
DEPDC1-204ENST00000489862 ZNF174Q15697 407 aa4□□□□□ -1.77
DEPDC1-204ENST00000489862 TTC38Q5R3I4 469 aa4□□□□□ -1.77
DEPDC1-204ENST00000489862 LCE1AQ5T7P2 110 aa4□□□□□ -1.77
DEPDC1-204ENST00000489862 LAIR1Q6GTX8 287 aa4□□□□□ -1.77
DEPDC1-204ENST00000489862 TCEAL8Q8IYN2 117 aa4□□□□□ -1.77
DEPDC1-204ENST00000489862 SYNPOQ8N3V7 929 aa4□□□□□ -1.77
DEPDC1-204ENST00000489862 ANKRD53Q8N9V6 530 aa4□□□□□ -1.77
DEPDC1-204ENST00000489862 OR5AN1Q8NGI8 311 aa4□□□□□ -1.77
DEPDC1-204ENST00000489862 LEO1Q8WVC0 666 aaPredicted RBP4□□□□□ -1.77
DEPDC1-204ENST00000489862 RABGGTAQ92696 567 aa4□□□□□ -1.77
DEPDC1-204ENST00000489862 RIOX1Q9H6W3 641 aa4□□□□□ -1.77
DEPDC1-204ENST00000489862 AASDHPPTQ9NRN7 309 aa4□□□□□ -1.77
DEPDC1-204ENST00000489862 TRHDEQ9UKU6 1024 aa4□□□□□ -1.77
DEPDC1-204ENST00000489862 SH3BP1Q9Y3L3 701 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms