RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	UBIAD1	Q9Y5Z9	338 aa		9.8	□□□□□ -0.84
USP4-213	ENST00000488520	SQOR	Q9Y6N5	450 aa		9.8	□□□□□ -0.84
USP4-213	ENST00000488520	DMD	P11532	3685 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	MAFG	O15525	162 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	BAG4	O95429	457 aa	Known RBP	9.79	□□□□□ -0.84
USP4-213	ENST00000488520	ATP2B1	P20020	1258 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	SYT1	P21579	422 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	STAT5B	P51692	787 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	PTPN21	Q16825	1174 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	DUSP6	Q16828	381 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	MTHFD1L	Q6UB35	978 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	COLGALT1	Q8NBJ5	622 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	CYP2W1	Q8TAV3	490 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	RASGRP4	Q8TDF6	673 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	TBCK	Q8TEA7	893 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	ATP8B4	Q8TF62	1192 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	PGBD1	Q96JS3	809 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	ADAM2	Q99965	735 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	9.79	□□□□□ -0.84
USP4-213	ENST00000488520	ERVK-5	Q9HDB9	667 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	JPH1	Q9HDC5	661 aa	Predicted RBP	9.79	□□□□□ -0.84
USP4-213	ENST00000488520	TYW1	Q9NV66	732 aa	Known RBP	9.79	□□□□□ -0.84
USP4-213	ENST00000488520	TCEAL9	Q9UHQ7	104 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	CDH22	Q9UJ99	828 aa		9.79	□□□□□ -0.84
USP4-213	ENST00000488520	NOC2L	Q9Y3T9	749 aa	Known RBP	9.79	□□□□□ -0.84
USP4-213	ENST00000488520	MIA3	Q5JRA6	1907 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	DOCK8	Q8NF50	2099 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	SMIM35	A0A1B0GVV1	85 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	DENND3	A2RUS2	1198 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	DDX39A	O00148	427 aa	Known RBP	9.78	□□□□□ -0.84
USP4-213	ENST00000488520	TERT	O14746	1132 aa	Known RBP	9.78	□□□□□ -0.84
USP4-213	ENST00000488520	CCNT1	O60563	726 aa	Known RBP	9.78	□□□□□ -0.84
USP4-213	ENST00000488520	RPS6KA5	O75582	802 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	WFS1	O76024	890 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	RPLP2	P05387	115 aa	Known RBP	9.78	□□□□□ -0.84
USP4-213	ENST00000488520	AR	P10275	920 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	FGFR1	P11362	822 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	ATF7	P17544	494 aa	Predicted RBP	9.78	□□□□□ -0.84
USP4-213	ENST00000488520	KLRC1	P26715	233 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	ACTR2	P61160	394 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	NUCB2	P80303	420 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	MCM6	Q14566	821 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	INF2	Q27J81	1249 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	LETM2	Q2VYF4	491 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	TRMT1L	Q7Z2T5	733 aa	Known RBP	9.78	□□□□□ -0.84
USP4-213	ENST00000488520	NEK8	Q86SG6	692 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	NOSTRIN	Q8IVI9	506 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	TMEM40	Q8WWA1	233 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	SUSD6	Q92537	303 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	SDF4	Q9BRK5	362 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	ENTPD7	Q9NQZ7	604 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	KCNH7	Q9NS40	1196 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	ST3GAL5	Q9UNP4	418 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	ATP6V1D	Q9Y5K8	247 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	FANCM	Q8IYD8	2048 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	DCHS1	Q96JQ0	3298 aa		9.78	□□□□□ -0.84
USP4-213	ENST00000488520	HIDE1	A8MVS5	230 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	MAN1A2	O60476	641 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	CYP3A4	P08684	503 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	GCFC2	P16383	781 aa	Known RBP	9.77	□□□□□ -0.85
USP4-213	ENST00000488520	SREBF1	P36956	1147 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	PBX3	P40426	434 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	UBE3A	Q05086	875 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	CEP55	Q53EZ4	464 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	ANKRD54	Q6NXT1	300 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	SYCE2	Q6PIF2	218 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	PLPPR4	Q7Z2D5	763 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	BRAP	Q7Z569	592 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	PLA2G4D	Q86XP0	818 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	NME8	Q8N427	588 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	KREMEN2	Q8NCW0	462 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	TNPO1	Q92973	898 aa	Known RBP	9.77	□□□□□ -0.85
USP4-213	ENST00000488520	RIPOR3	Q96MK2	946 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	IPO9	Q96P70	1041 aa	Known RBP	9.77	□□□□□ -0.85
USP4-213	ENST00000488520	TCF25	Q9BQ70	676 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	MXRA8	Q9BRK3	442 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	S1PR5	Q9H228	398 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	SMOC2	Q9H3U7	446 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	CWH43	Q9H720	699 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	RGS18	Q9NS28	235 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	KDM3A	Q9Y4C1	1321 aa		9.77	□□□□□ -0.85
USP4-213	ENST00000488520	SOBP	A7XYQ1	873 aa		9.76	□□□□□ -0.85
USP4-213	ENST00000488520		C9IYK1	514 aa		9.76	□□□□□ -0.85
USP4-213	ENST00000488520	BACH1	O14867	736 aa		9.76	□□□□□ -0.85
USP4-213	ENST00000488520	FSCN2	O14926	492 aa		9.76	□□□□□ -0.85
USP4-213	ENST00000488520	SPINT1	O43278	529 aa		9.76	□□□□□ -0.85
USP4-213	ENST00000488520	LILRA1	O75019	489 aa		9.76	□□□□□ -0.85
USP4-213	ENST00000488520	WEE2	P0C1S8	567 aa		9.76	□□□□□ -0.85
USP4-213	ENST00000488520	SRGAP2B	P0DMP2	458 aa		9.76	□□□□□ -0.85
USP4-213	ENST00000488520	ZSCAN22	P10073	491 aa	Predicted RBP	9.76	□□□□□ -0.85
USP4-213	ENST00000488520	U2AF2	P26368	475 aa	Known RBP eCLIP	9.76	□□□□□ -0.85
USP4-213	ENST00000488520	CA8	P35219	290 aa		9.76	□□□□□ -0.85
USP4-213	ENST00000488520	TRAPPC10	P48553	1259 aa		9.76	□□□□□ -0.85
USP4-213	ENST00000488520	SET	Q01105	290 aa	Predicted RBP	9.76	□□□□□ -0.85
USP4-213	ENST00000488520	ITGB3BP	Q13352	177 aa	Predicted RBP	9.76	□□□□□ -0.85
USP4-213	ENST00000488520	KCNC3	Q14003	757 aa		9.76	□□□□□ -0.85
USP4-213	ENST00000488520	KIZ	Q2M2Z5	673 aa		9.76	□□□□□ -0.85
USP4-213	ENST00000488520	PRR16	Q569H4	304 aa		9.76	□□□□□ -0.85
USP4-213	ENST00000488520	RILPL1	Q5EBL4	403 aa		9.76	□□□□□ -0.85
USP4-213	ENST00000488520	FOXD4L5	Q5VV16	416 aa	Predicted RBP	9.76	□□□□□ -0.85

Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms