RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 COL11A2P13942 1736 aaPredicted RBP5.17□□□□□ -1.58
SMC4-220ENST00000488017 SPATA31D3P0C874 917 aa5.16□□□□□ -1.58
SMC4-220ENST00000488017 RANGAP1P46060 587 aaPredicted RBP5.16□□□□□ -1.58
SMC4-220ENST00000488017 RNASE9P60153 205 aaKnown RBP5.16□□□□□ -1.58
SMC4-220ENST00000488017 NHLH1Q02575 133 aa5.16□□□□□ -1.58
SMC4-220ENST00000488017 SPATA31D4Q6ZUB0 917 aa5.16□□□□□ -1.58
SMC4-220ENST00000488017 JMYQ8N9B5 988 aa5.16□□□□□ -1.58
SMC4-220ENST00000488017 MYL10Q9BUA6 226 aa5.16□□□□□ -1.58
SMC4-220ENST00000488017 USP36Q9P275 1121 aaKnown RBP5.16□□□□□ -1.58
SMC4-220ENST00000488017 TLK1Q9UKI8 766 aa5.16□□□□□ -1.58
SMC4-220ENST00000488017 APOL3O95236 402 aa5.15□□□□□ -1.59
SMC4-220ENST00000488017 EGR2P11161 476 aaPredicted RBP5.15□□□□□ -1.59
SMC4-220ENST00000488017 DDX6P26196 483 aaKnown RBP eCLIP5.15□□□□□ -1.59
SMC4-220ENST00000488017 IGFALSP35858 605 aa5.15□□□□□ -1.59
SMC4-220ENST00000488017 PTH2RP49190 550 aa5.15□□□□□ -1.59
SMC4-220ENST00000488017 NHLH2Q02577 135 aa5.15□□□□□ -1.59
SMC4-220ENST00000488017 FOXF2Q12947 444 aa5.15□□□□□ -1.59
SMC4-220ENST00000488017 MPP3Q13368 585 aa5.15□□□□□ -1.59
SMC4-220ENST00000488017 RASA3Q14644 834 aa5.15□□□□□ -1.59
SMC4-220ENST00000488017 ARMC6Q6NXE6 501 aa5.15□□□□□ -1.59
SMC4-220ENST00000488017 ESRP1Q6NXG1 681 aaKnown RBP5.15□□□□□ -1.59
SMC4-220ENST00000488017 UNQ6494/PRO21346Q6UXR6 183 aa5.15□□□□□ -1.59
SMC4-220ENST00000488017 TAS1R1Q7RTX1 841 aa5.15□□□□□ -1.59
SMC4-220ENST00000488017 ZZZ3Q8IYH5 903 aa5.15□□□□□ -1.59
SMC4-220ENST00000488017 ANKS1AQ92625 1134 aa5.15□□□□□ -1.59
SMC4-220ENST00000488017 TESQ9UGI8 421 aaKnown RBP5.15□□□□□ -1.59
SMC4-220ENST00000488017 MYADML2A6NDP7 307 aa5.14□□□□□ -1.59
SMC4-220ENST00000488017 LY86O95711 162 aa5.14□□□□□ -1.59
SMC4-220ENST00000488017 MGAT1P26572 445 aa5.14□□□□□ -1.59
SMC4-220ENST00000488017 MPLP40238 635 aa5.14□□□□□ -1.59
SMC4-220ENST00000488017 DUSP2Q05923 314 aa5.14□□□□□ -1.59
SMC4-220ENST00000488017 CD69Q07108 199 aa5.14□□□□□ -1.59
SMC4-220ENST00000488017 SRRM1Q8IYB3 904 aaKnown RBP5.14□□□□□ -1.59
SMC4-220ENST00000488017 DUSP26Q9BV47 211 aa5.14□□□□□ -1.59
SMC4-220ENST00000488017 SPON1Q9HCB6 807 aa5.14□□□□□ -1.59
SMC4-220ENST00000488017 NCOA5Q9HCD5 579 aaKnown RBP5.14□□□□□ -1.59
SMC4-220ENST00000488017 B4GALT6Q9UBX8 382 aa5.14□□□□□ -1.59
SMC4-220ENST00000488017 PPP1R1BQ9UD71 204 aaPredicted RBP5.14□□□□□ -1.59
SMC4-220ENST00000488017 SPO11Q9Y5K1 396 aa5.14□□□□□ -1.59
SMC4-220ENST00000488017 UNC119BA6NIH7 251 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 MARCH11A6NNE9 402 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 PLD2O14939 933 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 RBP3P10745 1247 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 MXRA7P84157 204 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 TP53BP2Q13625 1128 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 PDCD4Q53EL6 469 aaKnown RBP5.13□□□□□ -1.59
SMC4-220ENST00000488017 BTNL9Q6UXG8 535 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 XYLT1Q86Y38 959 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 SYT12Q8IV01 421 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 CDYL2Q8N8U2 506 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 OR10H5Q8NGA6 315 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 ASB10Q8WXI3 467 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 DEPDC7Q96QD5 511 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 ELF4Q99607 663 aaPredicted RBP5.13□□□□□ -1.59
SMC4-220ENST00000488017 ADAM2Q99965 735 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 POFUT1Q9H488 388 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 PCDHB6Q9Y5E3 794 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 MAST3O60307 1309 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 MYPNQ86TC9 1320 aa5.13□□□□□ -1.59
SMC4-220ENST00000488017 SEC24DO94855 1032 aaPredicted RBP5.12□□□□□ -1.59
SMC4-220ENST00000488017 IGLV2-14P01704 120 aa5.12□□□□□ -1.59
SMC4-220ENST00000488017 ASLP04424 464 aa5.12□□□□□ -1.59
SMC4-220ENST00000488017 SLC9A1P19634 815 aa5.12□□□□□ -1.59
SMC4-220ENST00000488017 PLA2G5P39877 138 aa5.12□□□□□ -1.59
SMC4-220ENST00000488017 SERINC3Q13530 473 aa5.12□□□□□ -1.59
SMC4-220ENST00000488017 SMG7Q92540 1137 aaKnown RBP5.12□□□□□ -1.59
SMC4-220ENST00000488017 TEX101Q9BY14 249 aa5.12□□□□□ -1.59
SMC4-220ENST00000488017 INTS7Q9NVH2 962 aaKnown RBP5.12□□□□□ -1.59
SMC4-220ENST00000488017 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.12□□□□□ -1.59
SMC4-220ENST00000488017 PODXL2Q9NZ53 605 aa5.12□□□□□ -1.59
SMC4-220ENST00000488017 FPGT-TNNI3KV9GXZ4 949 aa5.12□□□□□ -1.59
SMC4-220ENST00000488017 B5MCH6 92 aa5.11□□□□□ -1.59
SMC4-220ENST00000488017 NRP2O60462 931 aa5.11□□□□□ -1.59
SMC4-220ENST00000488017 RBMXL2O75526 392 aaKnown RBP5.11□□□□□ -1.59
SMC4-220ENST00000488017 PCDH8O95206 1070 aa5.11□□□□□ -1.59
SMC4-220ENST00000488017 SPDEFO95238 335 aa5.11□□□□□ -1.59
SMC4-220ENST00000488017 GPR15P49685 360 aa5.11□□□□□ -1.59
SMC4-220ENST00000488017 CCDC178Q5BJE1 867 aa5.11□□□□□ -1.59
SMC4-220ENST00000488017 SP5Q6BEB4 398 aaPredicted RBP5.11□□□□□ -1.59
SMC4-220ENST00000488017 SCARB1Q8WTV0 552 aa5.11□□□□□ -1.59
SMC4-220ENST00000488017 SNTG2Q9NY99 539 aa5.11□□□□□ -1.59
SMC4-220ENST00000488017 COL3A1P02461 1466 aaPredicted RBP5.11□□□□□ -1.59
SMC4-220ENST00000488017 FAM221BA6H8Z2 402 aa5.1□□□□□ -1.59
SMC4-220ENST00000488017 APBA1Q02410 837 aa5.1□□□□□ -1.59
SMC4-220ENST00000488017 MAPK7Q13164 816 aa5.1□□□□□ -1.59
SMC4-220ENST00000488017 CREB3L3Q68CJ9 461 aa5.1□□□□□ -1.59
SMC4-220ENST00000488017 EFCAB12Q6NXP0 572 aa5.1□□□□□ -1.59
SMC4-220ENST00000488017 MSL3Q8N5Y2 521 aaKnown RBP5.1□□□□□ -1.59
SMC4-220ENST00000488017 C9orf106Q8NAJ2 232 aa5.1□□□□□ -1.59
SMC4-220ENST00000488017 RTF1Q92541 710 aaKnown RBP5.1□□□□□ -1.59
SMC4-220ENST00000488017 DNAJC7Q99615 494 aa5.1□□□□□ -1.59
SMC4-220ENST00000488017 HIRIP3Q9BW71 556 aaPredicted RBP5.1□□□□□ -1.59
SMC4-220ENST00000488017 TOMM22Q9NS69 142 aa5.1□□□□□ -1.59
SMC4-220ENST00000488017 SEMA4GQ9NTN9 838 aa5.1□□□□□ -1.59
SMC4-220ENST00000488017 RNF181Q9P0P0 153 aa5.1□□□□□ -1.59
SMC4-220ENST00000488017 A0A1W2PR48 441 aa5.09□□□□□ -1.59
SMC4-220ENST00000488017 CBX4O00257 560 aa5.09□□□□□ -1.59
SMC4-220ENST00000488017 MATN4O95460 622 aa5.09□□□□□ -1.59
SMC4-220ENST00000488017 FOSP01100 380 aaPredicted RBP5.09□□□□□ -1.59
SMC4-220ENST00000488017 ITGAMP11215 1152 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms