RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 TUBA3CQ13748 450 aa5.51□□□□□ -1.53
VPS41-213ENST00000485955 CT47A1Q5JQC4 288 aaPredicted RBP5.51□□□□□ -1.53
VPS41-213ENST00000485955 TUBA3EQ6PEY2 450 aa5.51□□□□□ -1.53
VPS41-213ENST00000485955 KRT26Q7Z3Y9 468 aa5.51□□□□□ -1.53
VPS41-213ENST00000485955 XYLT1Q86Y38 959 aa5.51□□□□□ -1.53
VPS41-213ENST00000485955 LSM14BQ9BX40 385 aaKnown RBP5.51□□□□□ -1.53
VPS41-213ENST00000485955 KRTAP17-1Q9BYP8 105 aa5.51□□□□□ -1.53
VPS41-213ENST00000485955 CPEB1Q9BZB8 566 aaKnown RBP5.51□□□□□ -1.53
VPS41-213ENST00000485955 PARPBPQ9NWS1 579 aa5.51□□□□□ -1.53
VPS41-213ENST00000485955 SRRDQ9UH36 339 aa5.51□□□□□ -1.53
VPS41-213ENST00000485955 ZMYM3Q14202 1370 aa5.51□□□□□ -1.53
VPS41-213ENST00000485955 GRXCR1A8MXD5 290 aa5.5□□□□□ -1.53
VPS41-213ENST00000485955 CYR61O00622 381 aa5.5□□□□□ -1.53
VPS41-213ENST00000485955 PRAMEF4O60810 478 aa5.5□□□□□ -1.53
VPS41-213ENST00000485955 FAM20BO75063 409 aa5.5□□□□□ -1.53
VPS41-213ENST00000485955 GNAT2P19087 354 aa5.5□□□□□ -1.53
VPS41-213ENST00000485955 CANXP27824 592 aaKnown RBP5.5□□□□□ -1.53
VPS41-213ENST00000485955 CDK17Q00537 523 aa5.5□□□□□ -1.53
VPS41-213ENST00000485955 CSRP2Q16527 193 aa5.5□□□□□ -1.53
VPS41-213ENST00000485955 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.5□□□□□ -1.53
VPS41-213ENST00000485955 C19orf54Q5BKX5 351 aa5.5□□□□□ -1.53
VPS41-213ENST00000485955 APBB1IPQ7Z5R6 666 aaPredicted RBP5.5□□□□□ -1.53
VPS41-213ENST00000485955 SNX33Q8WV41 574 aa5.5□□□□□ -1.53
VPS41-213ENST00000485955 IL17RAQ96F46 866 aa5.5□□□□□ -1.53
VPS41-213ENST00000485955 ACAP3Q96P50 834 aa5.5□□□□□ -1.53
VPS41-213ENST00000485955 CPPED1Q9BRF8 314 aaPredicted RBP5.5□□□□□ -1.53
VPS41-213ENST00000485955 EPC1Q9H2F5 836 aa5.5□□□□□ -1.53
VPS41-213ENST00000485955 MMRN2Q9H8L6 949 aa5.5□□□□□ -1.53
VPS41-213ENST00000485955 DNAJC6O75061 913 aa5.49□□□□□ -1.53
VPS41-213ENST00000485955 PRKD3O94806 890 aa5.49□□□□□ -1.53
VPS41-213ENST00000485955 IPO13O94829 963 aaKnown RBP5.49□□□□□ -1.53
VPS41-213ENST00000485955 CLSTN1O94985 981 aa5.49□□□□□ -1.53
VPS41-213ENST00000485955 GZMKP49863 264 aa5.49□□□□□ -1.53
VPS41-213ENST00000485955 WNT3AP56704 352 aa5.49□□□□□ -1.53
VPS41-213ENST00000485955 CCT2P78371 535 aaKnown RBP5.49□□□□□ -1.53
VPS41-213ENST00000485955 NAIF1Q69YI7 327 aaPredicted RBP5.49□□□□□ -1.53
VPS41-213ENST00000485955 IQSEC1Q6DN90 963 aa5.49□□□□□ -1.53
VPS41-213ENST00000485955 USP51Q70EK9 711 aa5.49□□□□□ -1.53
VPS41-213ENST00000485955 KCNK18Q7Z418 384 aa5.49□□□□□ -1.53
VPS41-213ENST00000485955 WDR66Q8TBY9 1149 aa5.49□□□□□ -1.53
VPS41-213ENST00000485955 TSPEARQ8WU66 669 aa5.49□□□□□ -1.53
VPS41-213ENST00000485955 ORAI2Q96SN7 254 aa5.49□□□□□ -1.53
VPS41-213ENST00000485955 MRIQ9BWK5 157 aa5.49□□□□□ -1.53
VPS41-213ENST00000485955 C14orf119Q9NWQ9 140 aa5.49□□□□□ -1.53
VPS41-213ENST00000485955 GPRC5BQ9NZH0 403 aa5.49□□□□□ -1.53
VPS41-213ENST00000485955 TRPS1Q9UHF7 1281 aa5.49□□□□□ -1.53
VPS41-213ENST00000485955 GOLGA6L6A8MZA4 724 aa5.48□□□□□ -1.53
VPS41-213ENST00000485955 WNT10BO00744 389 aa5.48□□□□□ -1.53
VPS41-213ENST00000485955 GPR39O43194 453 aa5.48□□□□□ -1.53
VPS41-213ENST00000485955 ITGA10O75578 1167 aa5.48□□□□□ -1.53
VPS41-213ENST00000485955 CNGA1P29973 690 aa5.48□□□□□ -1.53
VPS41-213ENST00000485955 GPR3P46089 330 aa5.48□□□□□ -1.53
VPS41-213ENST00000485955 MEF2AQ02078 507 aaPredicted RBP5.48□□□□□ -1.53
VPS41-213ENST00000485955 APBA1Q02410 837 aa5.48□□□□□ -1.53
VPS41-213ENST00000485955 RABL3Q5HYI8 236 aa5.48□□□□□ -1.53
VPS41-213ENST00000485955 ANKS6Q68DC2 871 aa5.48□□□□□ -1.53
VPS41-213ENST00000485955 FAM83AQ86UY5 434 aa5.48□□□□□ -1.53
VPS41-213ENST00000485955 OR52N2Q8NGI0 321 aa5.48□□□□□ -1.53
VPS41-213ENST00000485955 COG1Q8WTW3 980 aa5.48□□□□□ -1.53
VPS41-213ENST00000485955 RAX2Q96IS3 184 aa5.48□□□□□ -1.53
VPS41-213ENST00000485955 QRSL1Q9H0R6 528 aaKnown RBP5.48□□□□□ -1.53
VPS41-213ENST00000485955 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.48□□□□□ -1.53
VPS41-213ENST00000485955 RPS6KA4O75676 772 aa5.47□□□□□ -1.53
VPS41-213ENST00000485955 GYPEP15421 78 aa5.47□□□□□ -1.53
VPS41-213ENST00000485955 NR4A1P22736 598 aa5.47□□□□□ -1.53
VPS41-213ENST00000485955 MRPS9P82933 396 aaKnown RBP5.47□□□□□ -1.53
VPS41-213ENST00000485955 ABHD18Q0P651 414 aa5.47□□□□□ -1.53
VPS41-213ENST00000485955 FHL2Q14192 279 aa5.47□□□□□ -1.53
VPS41-213ENST00000485955 ZNF662Q6ZS27 426 aa5.47□□□□□ -1.53
VPS41-213ENST00000485955 GPRIN1Q7Z2K8 1008 aa5.47□□□□□ -1.53
VPS41-213ENST00000485955 GLB1L3Q8NCI6 653 aaPredicted RBP5.47□□□□□ -1.53
VPS41-213ENST00000485955 MDM1Q8TC05 714 aa5.47□□□□□ -1.53
VPS41-213ENST00000485955 LARP4BQ92615 738 aaKnown RBP5.47□□□□□ -1.53
VPS41-213ENST00000485955 CLIP3Q96DZ5 547 aa5.47□□□□□ -1.53
VPS41-213ENST00000485955 AHCYL2Q96HN2 611 aaKnown RBP5.47□□□□□ -1.53
VPS41-213ENST00000485955 PDCD2LQ9BRP1 358 aa5.47□□□□□ -1.53
VPS41-213ENST00000485955 SORCS3Q9UPU3 1222 aa5.47□□□□□ -1.53
VPS41-213ENST00000485955 REXO2Q9Y3B8 237 aaKnown RBP5.47□□□□□ -1.53
VPS41-213ENST00000485955 RPTORQ8N122 1335 aa5.47□□□□□ -1.53
VPS41-213ENST00000485955 PHLDB1Q86UU1 1377 aa5.46□□□□□ -1.54
VPS41-213ENST00000485955 ADCY6O43306 1168 aa5.46□□□□□ -1.54
VPS41-213ENST00000485955 ADSLP30566 484 aaPredicted RBP5.46□□□□□ -1.54
VPS41-213ENST00000485955 MCM7P33993 719 aa5.46□□□□□ -1.54
VPS41-213ENST00000485955 HMGA2P52926 109 aa5.46□□□□□ -1.54
VPS41-213ENST00000485955 SRSF2Q01130 221 aaKnown RBP5.46□□□□□ -1.54
VPS41-213ENST00000485955 VPS72Q15906 364 aa5.46□□□□□ -1.54
VPS41-213ENST00000485955 ADRM1Q16186 407 aa5.46□□□□□ -1.54
VPS41-213ENST00000485955 MUM1Q2TAK8 710 aa5.46□□□□□ -1.54
VPS41-213ENST00000485955 DCAF17Q5H9S7 520 aaPredicted RBP5.46□□□□□ -1.54
VPS41-213ENST00000485955 TOR2AQ5JU69 321 aa5.46□□□□□ -1.54
VPS41-213ENST00000485955 MFSD14BQ5SR56 506 aa5.46□□□□□ -1.54
VPS41-213ENST00000485955 Q6ZVL8 140 aa5.46□□□□□ -1.54
VPS41-213ENST00000485955 DOK3Q7L591 496 aa5.46□□□□□ -1.54
VPS41-213ENST00000485955 ZNF627Q7L945 461 aa5.46□□□□□ -1.54
VPS41-213ENST00000485955 ZNF483Q8TF39 744 aaPredicted RBP5.46□□□□□ -1.54
VPS41-213ENST00000485955 NEU4Q8WWR8 484 aaPredicted RBP5.46□□□□□ -1.54
VPS41-213ENST00000485955 RIN2Q8WYP3 895 aaPredicted RBP5.46□□□□□ -1.54
VPS41-213ENST00000485955 CEP95Q96GE4 821 aa5.46□□□□□ -1.54
VPS41-213ENST00000485955 CDC5LQ99459 802 aaKnown RBP5.46□□□□□ -1.54
VPS41-213ENST00000485955 IFT122Q9HBG6 1241 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms