RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 APOL6Q9BWW8 343 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 MRPL9Q9BYD2 267 aaKnown RBP8.87□□□□□ -0.99
USP40-216ENST00000485943 CSRNP2Q9H175 543 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 PRO3102Q9H379 93 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 CHST12Q9NRB3 414 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 PRMT7Q9NVM4 692 aaPredicted RBP8.87□□□□□ -0.99
USP40-216ENST00000485943 KCND2Q9NZV8 630 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 PCDHB12Q9Y5F1 795 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 GBF1Q92538 1859 aa8.87□□□□□ -0.99
USP40-216ENST00000485943 CARNS1A5YM72 827 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 SOX1O00570 391 aaPredicted RBP8.86□□□□□ -0.99
USP40-216ENST00000485943 ENPP3O14638 875 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 CUTAO60888 179 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 HIP1RO75146 1068 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 GPR32O75388 356 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 CSPG5O95196 566 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 PRKCBP05771 671 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 ITGA4P13612 1032 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 IDEP14735 1019 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 CYP11B2P19099 503 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 NAMPTP43490 491 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 PEX3P56589 373 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 MBTPS1Q14703 1052 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 SLC39A14Q15043 492 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 KARSQ15046 597 aaKnown RBP8.86□□□□□ -0.99
USP40-216ENST00000485943 BRICD5Q6PL45 260 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 GLB1LQ6UWU2 654 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 STXBP4Q6ZWJ1 553 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 Q7L0L9 218 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 TMCO2Q7Z6W1 182 aaPredicted RBP8.86□□□□□ -0.99
USP40-216ENST00000485943 THNSL1Q8IYQ7 743 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 MYCT1Q8N699 235 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 CNNM3Q8NE01 707 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 MICAL1Q8TDZ2 1067 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 TOP1MTQ969P6 601 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 PANK2Q9BZ23 570 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 SCAND2PQ9GZW5 306 aaPredicted RBP8.86□□□□□ -0.99
USP40-216ENST00000485943 PRDM12Q9H4Q4 367 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 AGO3Q9H9G7 860 aaKnown RBP8.86□□□□□ -0.99
USP40-216ENST00000485943 ERVK-5Q9HDB9 667 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 RGS18Q9NS28 235 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 WRAP73Q9P2S5 460 aaPredicted RBP8.86□□□□□ -0.99
USP40-216ENST00000485943 STK17AQ9UEE5 414 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 PARP2Q9UGN5 583 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 INPP5FQ9Y2H2 1132 aa8.86□□□□□ -0.99
USP40-216ENST00000485943 SRPRBQ9Y5M8 271 aaKnown RBP8.86□□□□□ -0.99
USP40-216ENST00000485943 ADGRA3Q8IWK6 1321 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 K7ENM7 598 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 N4BP3O15049 544 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 PPP6R2O75170 966 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 SPATA31C1P0DKV0 1188 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 HARSP12081 509 aaKnown RBP8.85□□□□□ -0.99
USP40-216ENST00000485943 MYOGP15173 224 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 PLCG1P19174 1290 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 YARSP54577 528 aaKnown RBP8.85□□□□□ -0.99
USP40-216ENST00000485943 KRT17Q04695 432 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 DNM1Q05193 864 aaKnown RBP8.85□□□□□ -0.99
USP40-216ENST00000485943 DRP2Q13474 957 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 LONRF3Q496Y0 759 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 FAM109BQ6ICB4 259 aaPredicted RBP8.85□□□□□ -0.99
USP40-216ENST00000485943 SCUBE3Q8IX30 993 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 SYCP3Q8IZU3 236 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 C4orf32Q8N8J7 132 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 IQUBQ8NA54 791 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 SLC17A8Q8NDX2 589 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 NOC3LQ8WTT2 800 aaKnown RBP8.85□□□□□ -0.99
USP40-216ENST00000485943 RAD54LQ92698 747 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 CCDC51Q96ER9 411 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 C11orf84Q9BUA3 381 aaPredicted RBP8.85□□□□□ -0.99
USP40-216ENST00000485943 GBP3Q9H0R5 595 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 ADAMTS10Q9H324 1103 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 SEMA6BQ9H3T3 888 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 C17orf75Q9HAS0 396 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 UBN1Q9NPG3 1134 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 GPRC5CQ9NQ84 441 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 TMEM161AQ9NX61 479 aa8.85□□□□□ -0.99
USP40-216ENST00000485943 PUF60Q9UHX1 559 aaKnown RBP8.85□□□□□ -0.99
USP40-216ENST00000485943 R3HCC1Q9Y3T6 440 aaKnown RBP8.85□□□□□ -0.99
USP40-216ENST00000485943 RBM19Q9Y4C8 960 aaKnown RBP8.85□□□□□ -0.99
USP40-216ENST00000485943 IGKV6-21A0A0C4DH24 114 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 CLSTN1O94985 981 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 NPTXRO95502 500 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 EOMESO95936 686 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 LAG3P18627 525 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 GLRA2P23416 452 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 ALDH7A1P49419 539 aaKnown RBP8.84□□□□□ -0.99
USP40-216ENST00000485943 PTENP60484 403 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 CAPSQ13938 189 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 NR6A1Q15406 480 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 RASIP1Q5U651 963 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 RINT1Q6NUQ1 792 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 TRAF7Q6Q0C0 670 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 LYPD8Q6UX82 237 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 DYMQ7RTS9 669 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 FAM178BQ8IXR5 827 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 CCDC65Q8IXS2 484 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 CMTR2Q8IYT2 770 aaKnown RBP8.84□□□□□ -0.99
USP40-216ENST00000485943 LRRC43Q8N309 656 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 SYT2Q8N9I0 419 aaPredicted RBP8.84□□□□□ -0.99
USP40-216ENST00000485943 LINC00301Q8NCQ3 95 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms