RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 EMC2Q15006 297 aa15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 NCAPH2Q6IBW4 605 aa15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 GALNT17Q6IS24 598 aa15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 ELMSAN1Q6PJG2 1045 aa15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 C15orf39Q6ZRI6 1047 aa15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 TAS1R1Q7RTX1 841 aa15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 MRPL10Q7Z7H8 261 aaKnown RBP15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 EIF2AQ9BY44 585 aaKnown RBP15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 RNF39Q9H2S5 420 aa15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 RSAD1Q9HA92 442 aa15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 XPNPEP1Q9NQW7 623 aa15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 MRPL17Q9NRX2 175 aaKnown RBP15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 HES2Q9Y543 173 aa15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 DCHS1Q96JQ0 3298 aa15.46■□□□□ 0.06
SQSTM1-208ENST00000485412 CCDC194A0A1B0GVG4 234 aa15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 C2CD2LO14523 706 aa15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 NRP1O14786 923 aa15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 LMNAP02545 664 aaKnown RBP15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 P4HBP07237 508 aaKnown RBP15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 YWHABP31946 246 aaKnown RBP15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 NR5A1Q13285 461 aa15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 PPP4R3AQ6IN85 833 aa15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 FERMT3Q86UX7 667 aa15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 RNF149Q8NC42 400 aa15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 PSPC1Q8WXF1 523 aaKnown RBP15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 SLC7A3Q8WY07 619 aa15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 STAMQ92783 540 aa15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 CPB2Q96IY4 423 aa15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 FAM20AQ96MK3 541 aa15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 SEMA4AQ9H3S1 761 aa15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 MAN1C1Q9NR34 630 aa15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 MIOSQ9NXC5 875 aa15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 FAN1Q9Y2M0 1017 aa15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 PRG3Q9Y2Y8 225 aaPredicted RBP15.45■□□□□ 0.06
SQSTM1-208ENST00000485412 STK36Q9NRP7 1315 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 EP300Q09472 2414 aaPredicted RBP15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 A0A087WWV3 80 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 TSPAN1O60635 241 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 N4BP1O75113 896 aaKnown RBP15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 LARGE1O95461 756 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 ALDH2P05091 517 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 URODP06132 367 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 AK2P54819 239 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 EPHA7Q15375 998 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 XKR9Q5GH70 373 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 SRGAP1Q7Z6B7 1085 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 C4orf19Q8IY42 314 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 CMASQ8NFW8 434 aaPredicted RBP15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 ASAP3Q8TDY4 903 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 TNFRSF25Q93038 417 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 B3GALT6Q96L58 329 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 ZFP42Q96MM3 310 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 HINFPQ9BQA5 517 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 TMEM175Q9BSA9 504 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 WNT16Q9UBV4 365 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 CA14Q9ULX7 337 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 IPPQ9Y573 584 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 WDR87Q6ZQQ6 2873 aa15.44■□□□□ 0.06
SQSTM1-208ENST00000485412 CACNA1AO00555 2505 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 CCDC195A0A1B0GUA6 201 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 PFKFB2O60825 505 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 ADH1AP07327 375 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 FDPSP14324 419 aaKnown RBP15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 NCLP19338 710 aaKnown RBP15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 MLH1P40692 756 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 RFC5P40937 340 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 CPLX2Q6PUV4 134 aaKnown RBP15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 CDR2LQ86X02 465 aaPredicted RBP15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 NECAB1Q8N987 351 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 RSAD2Q8WXG1 361 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 RIN2Q8WYP3 895 aaPredicted RBP15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 GAD1Q99259 594 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 JPH2Q9BR39 696 aaPredicted RBP15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 TBC1D17Q9HA65 648 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 KANSL3Q9P2N6 904 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 CACNG4Q9UBN1 327 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 DPP7Q9UHL4 492 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 SSX2IPQ9Y2D8 614 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 R4GN57 208 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 ZNF292O60281 2723 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 CLUHO75153 1309 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 CNTNAP2Q9UHC6 1331 aa15.43■□□□□ 0.06
SQSTM1-208ENST00000485412 KRBA1A5PL33 1030 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 INPPL1O15357 1258 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 B4GALT5O43286 388 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 SLITRK3O94933 977 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 EFEMP2O95967 443 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 GLUD1P00367 558 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 SOD2P04179 222 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 GCFC2P16383 781 aaKnown RBP15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 SCNN1GP51170 649 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 FOSBP53539 338 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 AMHR2Q16671 573 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 SPECC1Q5M775 1068 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 ZC3H14Q6PJT7 736 aaKnown RBP15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 CYP26C1Q6V0L0 522 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 TPH2Q8IWU9 490 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 COLGALT2Q8IYK4 626 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 KIAA2013Q8IYS2 634 aa15.42■□□□□ 0.06
SQSTM1-208ENST00000485412 FAM177A1Q8N128 213 aaPredicted RBP15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms