RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ZSCAN20P17040 1043 aaPredicted RBP13.4□□□□□ -0.26
SDC1-206ENST00000482879 SYN1P17600 705 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 CCNE1P24864 410 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 HOXA11P31270 313 aaPredicted RBP13.4□□□□□ -0.26
SDC1-206ENST00000482879 STX17P56962 302 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 PAK1Q13153 545 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 ANO6Q4KMQ2 910 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 PLEKHG4Q58EX7 1191 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 CT47A1Q5JQC4 288 aaPredicted RBP13.4□□□□□ -0.26
SDC1-206ENST00000482879 EEF1DP3Q658K8 133 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 SLFN12LQ6IEE8 588 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 CENPPQ6IPU0 288 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 SLC39A4Q6P5W5 647 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 NOTUMQ6P988 496 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 LRSAM1Q6UWE0 723 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 C11orf57Q6ZUT1 292 aaPredicted RBP13.4□□□□□ -0.26
SDC1-206ENST00000482879 HS2ST1Q7LGA3 356 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 CDR2LQ86X02 465 aaPredicted RBP13.4□□□□□ -0.26
SDC1-206ENST00000482879 DBF4BQ8NFT6 615 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 GOLGA5Q8TBA6 731 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 BADQ92934 168 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 P2RX5Q93086 422 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 TSG101Q99816 390 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 DNAJC25Q9H1X3 360 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 CHST12Q9NRB3 414 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 TYW1Q9NV66 732 aaKnown RBP13.4□□□□□ -0.26
SDC1-206ENST00000482879 PCDH10Q9P2E7 1040 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 TNFSF13BQ9Y275 285 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 NR2E3Q9Y5X4 410 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 CEP290O15078 2479 aa13.4□□□□□ -0.26
SDC1-206ENST00000482879 A0A1B0GUA9 196 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 BICDL2A1A5D9 508 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 CLDN3O15551 220 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 TOM1L1O75674 476 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 ERCC5P28715 1186 aaPredicted RBP13.39□□□□□ -0.27
SDC1-206ENST00000482879 PMS1P54277 932 aaKnown RBP13.39□□□□□ -0.27
SDC1-206ENST00000482879 ZNF445P59923 1031 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 SNRPFP62306 86 aaKnown RBP13.39□□□□□ -0.27
SDC1-206ENST00000482879 ANKRD40Q6AI12 368 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 MPZL3Q6UWV2 235 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 ZBTB33Q86T24 672 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 RPUSD2Q8IZ73 545 aaKnown RBP13.39□□□□□ -0.27
SDC1-206ENST00000482879 POMGNT1Q8WZA1 660 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 APBB2Q92870 758 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 CCDC51Q96ER9 411 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 ADPGKQ9BRR6 497 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 NAT10Q9H0A0 1025 aaKnown RBP13.39□□□□□ -0.27
SDC1-206ENST00000482879 TMX1Q9H3N1 280 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 PDZD7Q9H5P4 517 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 PTPRHQ9HD43 1115 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 AGPAT3Q9NRZ7 376 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 CGNQ9P2M7 1197 aaKnown RBP13.39□□□□□ -0.27
SDC1-206ENST00000482879 ANKFY1Q9P2R3 1169 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 RWDD2AQ9UIY3 292 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 TRAF3IP3Q9Y228 551 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 TRIP11Q15643 1979 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 CITO14578 2027 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 MICAL3Q7RTP6 2002 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 LTBP2Q14767 1821 aa13.39□□□□□ -0.27
SDC1-206ENST00000482879 TRIM49BA6NDI0 452 aa13.38□□□□□ -0.27
SDC1-206ENST00000482879 HARSP12081 509 aaKnown RBP13.38□□□□□ -0.27
SDC1-206ENST00000482879 GARTP22102 1010 aa13.38□□□□□ -0.27
SDC1-206ENST00000482879 PROZP22891 400 aa13.38□□□□□ -0.27
SDC1-206ENST00000482879 ADSSP30520 456 aa13.38□□□□□ -0.27
SDC1-206ENST00000482879 LRRC63Q05C16 580 aa13.38□□□□□ -0.27
SDC1-206ENST00000482879 PPIGQ13427 754 aaKnown RBP eCLIP13.38□□□□□ -0.27
SDC1-206ENST00000482879 DSC3Q14574 896 aa13.38□□□□□ -0.27
SDC1-206ENST00000482879 ZNF568Q3ZCX4 644 aa13.38□□□□□ -0.27
SDC1-206ENST00000482879 TWF2Q6IBS0 349 aaKnown RBP13.38□□□□□ -0.27
SDC1-206ENST00000482879 ARMCX5Q6P1M9 558 aa13.38□□□□□ -0.27
SDC1-206ENST00000482879 SLC27A1Q6PCB7 646 aa13.38□□□□□ -0.27
SDC1-206ENST00000482879 APBB1IPQ7Z5R6 666 aaPredicted RBP13.38□□□□□ -0.27
SDC1-206ENST00000482879 ADAM2Q99965 735 aa13.38□□□□□ -0.27
SDC1-206ENST00000482879 CBWD1Q9BRT8 395 aa13.38□□□□□ -0.27
SDC1-206ENST00000482879 FTHL17Q9BXU8 183 aa13.38□□□□□ -0.27
SDC1-206ENST00000482879 TSPY26PQ9H489 355 aa13.38□□□□□ -0.27
SDC1-206ENST00000482879 PCIF1Q9H4Z3 704 aa13.38□□□□□ -0.27
SDC1-206ENST00000482879 STYXL1Q9Y6J8 313 aa13.38□□□□□ -0.27
SDC1-206ENST00000482879 A0A0B4J269 797 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 ABLIM1O14639 778 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 MGEA5O60502 916 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 CAPN15O75808 1086 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 NPTXRO95502 500 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 NR3C1P04150 777 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 ACRP10323 421 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 MCF2P10911 925 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 RPL13P26373 211 aaKnown RBP13.37□□□□□ -0.27
SDC1-206ENST00000482879 CYP2J2P51589 502 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 FPGSQ05932 587 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 MCL1Q07820 350 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 ADAM9Q13443 819 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 NOLC1Q14978 699 aaKnown RBP eCLIP13.37□□□□□ -0.27
SDC1-206ENST00000482879 TPD52L1Q16890 204 aaPredicted RBP13.37□□□□□ -0.27
SDC1-206ENST00000482879 TCTN1Q2MV58 587 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 EDRF1Q3B7T1 1238 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 DCAF4L1Q3SXM0 396 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 ZCWPW2Q504Y3 356 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 UBXN11Q5T124 520 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 TTI2Q6NXR4 508 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 CNKSR3Q6P9H4 555 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms